Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, Pisa 56126, Italy.
Department of Physical and Chemical Sciences, University of L'Aquila, via Vetoio (Coppito 1), 67010 L'Aquila, Italy.
J Phys Chem Lett. 2021 Sep 16;12(36):8777-8783. doi: 10.1021/acs.jpclett.1c01855. Epub 2021 Sep 7.
Antifreeze proteins (AFPs) can bind to ice nuclei thereby inhibiting their growth and their hydration shell is believed to play a fundamental role. Here, we use molecular dynamics simulations to characterize the hydration shell of four moderately-active and four hyperactive AFPs. The local water density around the ice-binding-surface (IBS) is found to be lower than that around the non-ice-binding surface (NIBS) and this difference correlates with the higher hydrophobicity of the former. While the water-density increase (with respect to bulk) around the IBS is similar between moderately-active and hyperactive AFPs, it differs around the NIBS, being higher for the hyperactive AFPs. We hypothesize that while the lower water density at the IBS can pave the way to protein binding to ice nuclei, irrespective of the antifreeze activity, the higher density at the NIBS of the hyperactive AFPs contribute to their enhanced ability in inhibiting ice growth around the bound AFPs.
抗冻蛋白 (AFPs) 可以与冰核结合,从而抑制其生长,其水合壳被认为起着至关重要的作用。在这里,我们使用分子动力学模拟来表征四种中活性和四种高活性 AFP 的水合壳。发现冰结合表面 (IBS) 周围的局部水密度低于非冰结合表面 (NIBS),这种差异与前者的更高疏水性相关。虽然 IBS 周围的水密度增加(相对于本体)在中活性和高活性 AFP 之间相似,但在 NIBS 周围则不同,高活性 AFP 更高。我们假设,虽然 IBS 处的较低水密度可以为蛋白质与冰核的结合铺平道路,而与抗冻活性无关,但高活性 AFP 的 NIBS 处更高的密度有助于增强其抑制结合 AFP 周围冰生长的能力。