Department of Materials Science and Engineering, University of California, Irvine, CA 92697, USA.
Department of Biochemistry and Molecular Biology, The University of Kansas Medical Center, Kansas City, KS 66160, USA.
Int J Mol Sci. 2021 Aug 30;22(17):9388. doi: 10.3390/ijms22179388.
The anti-apoptotic protein Bcl-xL regulates apoptosis by preventing the permeation of the mitochondrial outer membrane by pro-apoptotic pore-forming proteins, which release apoptotic factors into the cytosol that ultimately lead to cell death. Two different membrane-integrated Bcl-xL constructs have been identified: a membrane-anchored and a membrane-inserted conformation. Here, we use molecular dynamics simulations to study the effect of the mitochondrial specific lipid cardiolipin and the protein protonation state on the conformational dynamics of membrane-anchored Bcl-xL. The analysis reveals that the protonation state of the protein and cardiolipin content of the membrane modulate the orientation of the soluble head region (helices α1 through α7) and hence the exposure of its BH3-binding groove, which is required for its interaction with pro-apoptotic proteins.
抗凋亡蛋白 Bcl-xL 通过阻止促凋亡孔形成蛋白穿透线粒体外膜来调节细胞凋亡,这些蛋白将凋亡因子释放到细胞质中,最终导致细胞死亡。已经鉴定出两种不同的膜整合 Bcl-xL 构象:膜锚定和膜插入构象。在这里,我们使用分子动力学模拟研究了线粒体特异性脂质心磷脂和蛋白质质子化状态对膜锚定 Bcl-xL 构象动力学的影响。分析表明,蛋白质的质子化状态和膜中心磷脂的含量调节可溶性头部区域(α1 至 α7 螺旋)的方向,从而暴露其 BH3 结合槽,这是与促凋亡蛋白相互作用所必需的。