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在 中与干旱胁迫生理响应相关的转录景观和枢纽基因。

The Transcriptional Landscape and Hub Genes Associated with Physiological Responses to Drought Stress in .

机构信息

Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.

State Key Laboratory of Crop Genetics and Germplasm Enhancement, Cotton Germplasm Enhancement and Application Engineering Research Center (Ministry of Education), Nanjing Agricultural University, Nanjing 210095, China.

出版信息

Int J Mol Sci. 2021 Sep 4;22(17):9604. doi: 10.3390/ijms22179604.

Abstract

Drought stress has an extensive impact on regulating various physiological, metabolic, and molecular responses. In the present study, the transcriptome was studied to evaluate the drought-responsive genes using RNA- Sequencing approache. The results depicted that photosynthetic rate and HO conductance started to decline under drought but recovered 24 h after re-watering; however, the intercellular CO concentration (Ci) increased with the onset of drought. We identified 84 drought-responsive transcription factors, 62 protein kinases, 17 transcriptional regulators, and 10 network hub genes. Additionally, we observed the expression patterns of several important gene families, including 2192 genes positively expressed in all 48 samples, and 40 genes were commonly co-expressed in all drought and recovery stages compared with the control samples. The drought-responsive transcriptome was conserved mainly between and , as 70% (6163) genes had a homologous in arabidopsis, out of which 52% homologous (3178 genes corresponding to 2086 genes in Arabidopsis) were also drought response genes in arabidopsis. The collaborative network exhibited 10 core hub genes integrating with ABA-dependent and independent pathways closely conserved with the ABA signaling pathway in the transcription factors module. from the ABA family genes had shown significantly different expression patterns under control, mild, prolonged drought, and recovery stages. We found the expression pattern was considerably increased with the prolonged drought condition. highly expressed in all drought-tested samples; more interestingly, expression pattern was higher under mild and prolonged drought. is reported as one of the important regulating enzymes in ABA synthesis. The continuous accumulation of ABA in leaves increased resistance against drought was due to accumulation of under drought stress in the pine needles.

摘要

干旱胁迫广泛影响调节各种生理、代谢和分子反应。本研究通过 RNA 测序方法研究了转录组,以评估干旱响应基因。结果表明,干旱条件下光合速率和 HO 导度开始下降,但复水 24 小时后恢复;然而,胞间 CO 浓度 (Ci) 在干旱开始时增加。我们鉴定了 84 个干旱响应转录因子、62 个蛋白激酶、17 个转录调控因子和 10 个网络枢纽基因。此外,我们观察到几个重要基因家族的表达模式,包括在所有 48 个样本中均正向表达的 2192 个基因,以及与对照样本相比,在所有干旱和恢复阶段均共同表达的 40 个基因。干旱响应转录组在 和 之间主要保守,因为 70%(6163 个)基因在拟南芥中有同源基因,其中 52%(3178 个基因对应拟南芥中的 2086 个基因)也是拟南芥中的干旱响应基因。协同网络显示了 10 个核心枢纽基因,整合了与 ABA 依赖和非依赖途径密切相关的转录因子模块中的 ABA 信号通路。ABA 家族的 基因在对照、轻度、持续干旱和恢复阶段的表达模式显示出显著差异。我们发现表达模式随着持续干旱条件的增加而显著增加。在所有干旱测试样本中高度表达;更有趣的是,在轻度和持续干旱下表达模式更高。被报道为 ABA 合成的重要调节酶之一。由于 ABA 在针叶中的积累,叶片中 ABA 的持续积累增加了对干旱的抗性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e4df/8431770/9f07313625b9/ijms-22-09604-g001.jpg

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