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一个通过文字处理和图形软件进行输入/输出的蛋白质亲水性分析微型计算机程序。

A microcomputer program for hydropathic analysis of proteins with I/O through word processing and graphics software.

作者信息

Weise M J

机构信息

Department of Neurology, Medical University of South Carolina, Charleston 29425.

出版信息

Comput Appl Biosci. 1986 Jun;2(2):103-6. doi: 10.1093/bioinformatics/2.2.103.

Abstract

A BASIC program has been devised for the hydropathic analysis of protein sequences according to the method of Kyte and Doolittle (1982). The program uses sequence data from input files that are created with a word processor and produces two types of output file: one contains a bar graph of the hydropathic profile in a format that can be easily edited; the other is a tabulation of hydropathic indices along a protein's sequence that can be used as input by the program for the production of a bar graph or as input into other graphics and analysis software. An MS-DOS microcomputer, operating under IBM BASICA or GWBASIC and a dot matrix printer with block graphics capabilities are the only hardware requirements for graphic display of hydropathy profiles. The program is capable of unattended analysis from a list of up to 15 input files.

摘要

已根据凯泰(Kyte)和杜利特尔(Doolittle)(1982年)的方法设计了一个用于蛋白质序列亲水性分析的BASIC程序。该程序使用由文字处理器创建的输入文件中的序列数据,并生成两种类型的输出文件:一种包含亲水性图谱的柱状图,其格式易于编辑;另一种是沿蛋白质序列的亲水性指数列表,可作为程序生成柱状图的输入,或作为其他图形和分析软件的输入。运行在IBM BASICA或GWBASIC下的MS-DOS微型计算机以及具有块图形功能的点阵打印机是亲水性图谱图形显示的唯一硬件要求。该程序能够对多达15个输入文件的列表进行无人值守分析。

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