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大肠杆菌提取物中DNA的同源依赖性反式切割:一种研究基因重组酶学的方法。

Homology-dependent cutting in trans of DNA in extracts of Escherichia coli: an approach to the enzymology of genetic recombination.

作者信息

Cassuto E, Mursalim J, Howard-Flanders P

出版信息

Proc Natl Acad Sci U S A. 1978 Feb;75(2):620-4. doi: 10.1073/pnas.75.2.620.

DOI:10.1073/pnas.75.2.620
PMID:345273
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC411307/
Abstract

An in vitro system is described in which the cutting of crosslinked phiX replicative form (RF) I DNA molecules by the uvr system of Escherichia coli induces the cutting of homologous undamaged DNA during incubation with crude extracts of thermally induced E. coli (lambda precA+) lysogens. This reaction, which has also been observed in intact E. coli lysogens infected with lambda phages, is dependent on the presence of functional recA+ and uvrB+ gene products. Extracts from thermally induced lambda precA+ lysogens of E. coli proved to be substantially more active than extracts from nonlysogenic cells of the same strain. The results provide preliminary evidence for an endonuclease activity that cuts intact superhelical DNA in response to interaction with homologus damaged DNA. In the present paper, we describe an in vitro system in which both the endonucleolytic cutting of DNA containing crosslinks and the induced cutting of undamaged DNA can be studied without purification of the participating enzymes. Although the information obtained is fragmentary and often puzzling, we feel that this system can contribute to an understanding of the complex mechanisms involved in repair and recombination.

摘要

本文描述了一种体外系统,在该系统中,大肠杆菌uvr系统切割交联的φX复制型(RF)I DNA分子,会在与热诱导的大肠杆菌(λprecA+)溶原菌的粗提物孵育期间,诱导切割同源的未受损DNA。这种反应,在感染了λ噬菌体的完整大肠杆菌溶原菌中也观察到,它依赖于功能性recA+和uvrB+基因产物的存在。事实证明,来自热诱导的大肠杆菌λprecA+溶原菌的提取物比来自同一菌株非溶原性细胞的提取物活性要高得多。这些结果为一种核酸内切酶活性提供了初步证据,该活性会响应与同源受损DNA的相互作用而切割完整的超螺旋DNA。在本文中,我们描述了一种体外系统,在该系统中,可以在不纯化参与的酶的情况下,研究含有交联的DNA的内切核酸酶切割以及未受损DNA的诱导切割。尽管所获得的信息是零碎的,而且常常令人困惑,但我们认为这个系统有助于理解参与修复和重组的复杂机制。

相似文献

1
Homology-dependent cutting in trans of DNA in extracts of Escherichia coli: an approach to the enzymology of genetic recombination.大肠杆菌提取物中DNA的同源依赖性反式切割:一种研究基因重组酶学的方法。
Proc Natl Acad Sci U S A. 1978 Feb;75(2):620-4. doi: 10.1073/pnas.75.2.620.
2
Initiation of recA+-dependent recombination in Escherichia coli (lambda). II. Specificity in the induction of recombination and strand cutting in undamaged covalent circular bacteriophage 186 and lambda DNA molecules in phage-infected cells.大肠杆菌(λ)中recA+依赖性重组的起始。II. 噬菌体感染细胞中未受损共价环状噬菌体186和λ DNA分子重组诱导及链切割的特异性
J Mol Biol. 1977 Nov 25;117(1):159-74. doi: 10.1016/0022-2836(77)90029-8.
3
Initiation of recA+-dependent recombination in Escherichia coli (lambda). I. Undamaged covalent circular lambda DNA molecules in uvrA+ recA+ lysogenic host cells are cut following superinfection with psoralen-damaged lambda phages.大肠杆菌(λ)中recA+依赖性重组的起始。I. 在uvrA+ recA+溶原性宿主细胞中,用补骨脂素损伤的λ噬菌体进行超感染后,未受损的共价环状λDNA分子被切割。
J Mol Biol. 1977 Nov 25;117(1):137-58. doi: 10.1016/0022-2836(77)90028-6.
4
Initiation of genetic exchanges in lambda phage--prophage crosses.λ噬菌体 - 原噬菌体杂交中基因交换的起始
Proc Natl Acad Sci U S A. 1977 Jan;74(1):291-5. doi: 10.1073/pnas.74.1.291.
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Early steps in genetic recombination induced by damaged DNA: cutting in trans in E coli cells and in protein extracts.受损DNA诱导的基因重组早期步骤:大肠杆菌细胞和蛋白质提取物中的反式切割
Cold Spring Harb Symp Quant Biol. 1979;43 Pt 2:1073-82. doi: 10.1101/sqb.1979.043.01.119.
6
Circular dimers of a lambda DNA in infected, nonlysogenic Escherichia coli.感染的非溶原性大肠杆菌中λ噬菌体DNA的环状二聚体
Virology. 1977 Sep;81(2):183-91. doi: 10.1016/0042-6822(77)90136-2.
7
A phage P1 function that stimulates homologous recombination of the Escherichia coli chromosome.一种刺激大肠杆菌染色体同源重组的噬菌体P1功能。
Proc Natl Acad Sci U S A. 1986 Jun;83(11):3885-9. doi: 10.1073/pnas.83.11.3885.
8
Effect of lig-7 on strand joining in repair of damaged DNA and on cutting of intact homologous DNA (cutting in trans) in Escherichia coli.Lig-7对大肠杆菌中受损DNA修复的链连接以及完整同源DNA切割(反式切割)的影响。
J Mol Biol. 1980 Dec 5;144(2):117-31. doi: 10.1016/0022-2836(80)90028-5.
9
Endonucleolytic incision of x-irradiated deoxyribonucleic acid by extracts of Escherichia coli.用大肠杆菌提取物对经X射线照射的脱氧核糖核酸进行核酸内切切割
Proc Natl Acad Sci U S A. 1975 Jun;72(6):1997-2001. doi: 10.1073/pnas.72.6.1997.
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Involement of supertwisted DNA in integrative recombination of bacteriophage lambda.超螺旋DNA参与噬菌体λ的整合重组。
J Mol Biol. 1978 May 25;121(3):375-92. doi: 10.1016/0022-2836(78)90370-4.

引用本文的文献

1
lambda Rap protein is a structure-specific endonuclease involved in phage recombination.λ Rap蛋白是一种参与噬菌体重组的结构特异性核酸内切酶。
Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13507-12. doi: 10.1073/pnas.95.23.13507.
2
Resolution of an early RecA-recombination intermediate by a junction-specific endonuclease.一种连接特异性核酸内切酶对早期RecA重组中间体的拆分
Proc Natl Acad Sci U S A. 1997 Jun 10;94(12):6079-83. doi: 10.1073/pnas.94.12.6079.
3
Release of 5'-terminal deoxyribose-phosphate residues from incised abasic sites in DNA by the Escherichia coli RecJ protein.大肠杆菌RecJ蛋白从DNA中切口的无碱基位点释放5'-末端脱氧核糖磷酸残基。
Nucleic Acids Res. 1994 Mar 25;22(6):993-8. doi: 10.1093/nar/22.6.993.
4
Evidence that dimers remaining in preinduced Escherichia coli B/r Hcr+ become insensitive after DNA replication to the extract from Micrococcus luteus.有证据表明,在DNA复制后,滞留在未诱导的大肠杆菌B/r Hcr+中的二聚体对藤黄微球菌提取物变得不敏感。
Biophys J. 1981 Nov;36(2):429-41. doi: 10.1016/S0006-3495(81)84742-X.
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Genetic recombination: recA protein promotes homologous pairing between duplex DNA molecules without strand unwinding.基因重组:RecA蛋白促进双链DNA分子间的同源配对,而无需解链。
Nucleic Acids Res. 1981 Aug 25;9(16):4201-10. doi: 10.1093/nar/9.16.4201.
6
Sequences of the recA gene and protein.recA基因和蛋白质的序列。
Proc Natl Acad Sci U S A. 1980 May;77(5):2611-5. doi: 10.1073/pnas.77.5.2611.
7
Effect of ssbA1 and lexC113 mutations on lambda prophage induction, bacteriophage growth, and cell survival.ssbA1和lexC113突变对λ原噬菌体诱导、噬菌体生长及细胞存活的影响。
J Bacteriol. 1980 Aug;143(2):887-96. doi: 10.1128/jb.143.2.887-896.1980.
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Initiation of genetic recombination: homologous pairing between duplex DNA molecules promoted by recA protein.遗传重组的起始:由recA蛋白促进的双链DNA分子之间的同源配对。
Proc Natl Acad Sci U S A. 1980 Jul;77(7):3962-6. doi: 10.1073/pnas.77.7.3962.
9
Deoxyribonucleic acid repair in bacteriophage.噬菌体中的脱氧核糖核酸修复
Microbiol Rev. 1981 Mar;45(1):72-98. doi: 10.1128/mr.45.1.72-98.1981.
10
Postreplication repair in E. coli: strand exchange reactions of gapped DNA by RecA protein.大肠杆菌中的复制后修复:RecA 蛋白介导的缺口 DNA 的链交换反应。
Mol Gen Genet. 1982;187(2):209-17. doi: 10.1007/BF00331119.

本文引用的文献

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Induction of Mitotic Crossing-over in Aspergillus Nidulans by Bifunctional Alkylating Agents.双功能烷化剂诱导构巢曲霉有丝分裂交换
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ISOLATION AND CHARACTERIZATION OF RECOMBINATION-DEFICIENT MUTANTS OF ESCHERICHIA COLI K12.大肠杆菌K12重组缺陷突变体的分离与鉴定
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[Genetic study of a temperate bacteriophage of Escherichia coli. III. Effect of ultraviolet rays on genetic recombination].[大肠杆菌一种温和噬菌体的遗传学研究。III. 紫外线对基因重组的影响]
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Ultraviolet reactivation and ultraviolet mutagenesis of lambda in different genetic systems.λ噬菌体在不同遗传系统中的紫外线复活和紫外线诱变
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Sedimentation properties of phage DNA molecules containing light-induced psoralen cross-links.含有光诱导补骨脂素交联的噬菌体DNA分子的沉降特性。
Biochim Biophys Acta. 1970 Dec 14;224(2):660-2. doi: 10.1016/0005-2787(70)90607-6.
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Mutants of Escherichia coli K-12 defective in DNA repair and in genetic recombination.大肠杆菌K-12中DNA修复和基因重组存在缺陷的突变体。
Genetics. 1966 Jun;53(6):1137-50. doi: 10.1093/genetics/53.6.1137.
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Cross-linking and repair of DNA in sensitive and resistant strains of E. coli treated with nitrogen mustard.用氮芥处理的大肠杆菌敏感株和抗性株中DNA的交联与修复
Proc Natl Acad Sci U S A. 1965 May;53(5):1154-61. doi: 10.1073/pnas.53.5.1154.
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Exchanges between DNA strands in ultraviolet-irradiated Escherichia coli.紫外线照射的大肠杆菌中DNA链之间的交换
J Mol Biol. 1971 Oct 14;61(1):25-44. doi: 10.1016/0022-2836(71)90204-x.
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Potassium transport loci in Escherichia coli K-12.大肠杆菌K-12中的钾离子转运基因座
J Bacteriol. 1971 Nov;108(2):639-44. doi: 10.1128/jb.108.2.639-644.1971.
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Pleiotropic effect of the rec A gene of Escherichia coli: uncoupling of cell division from deoxyribonucleic acid replication.大肠杆菌rec A基因的多效性作用:细胞分裂与脱氧核糖核酸复制的解偶联
J Bacteriol. 1971 May;106(2):539-42. doi: 10.1128/jb.106.2.539-542.1971.