Complex Carbohydrate Research Center, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA; Department of Biochemistry and Molecular Biology, University of Georgia, 315 Riverbend Road, Athens, GA 30602, USA.
Renewable Resources and Enabling Sciences Center, National Renewable Energy Laboratory, 16253 Denver West Parkway, Golden, CO 80401, USA.
Carbohydr Polym. 2021 Dec 1;273:118564. doi: 10.1016/j.carbpol.2021.118564. Epub 2021 Aug 19.
Xylan O-acetyltransferase 1 (XOAT1) is involved in O-acetylating the backbone of hemicellulose xylan. Recent structural analysis of XOAT1 showed two unequal lobes forming a cleft that is predicted to accommodate and position xylan acceptors into proximity with the catalytic triad. Here, we used docking and molecular dynamics simulations to investigate the optimal orientation of xylan in the binding cleft of XOAT1 and identify putative key residues (Gln445 and Arg444 on Minor lobe & Asn312, Met311 and Asp403 on Major lobe) involved in substrate interactions. Site-directed mutagenesis coupled with biochemical analyses revealed the major lobe of XOAT1 is important for xylan binding. Mutation of single key residues yielded XOAT1 variants with various enzymatic efficiencies that are applicable to one-pot synthesis of xylan polymers with different degrees of O-acetylation. Taken together, our results demonstrate the effectiveness of computational modeling in guiding enzyme engineering aimed at modulating xylan and redesigning plant cell walls.
木聚糖 O-乙酰基转移酶 1(XOAT1)参与对半纤维素木聚糖的骨架进行 O-乙酰化。最近对 XOAT1 的结构分析表明,它由两个不等的叶瓣形成一个裂隙,该裂隙预测可容纳并将木聚糖受体定位到与催化三联体接近的位置。在这里,我们使用对接和分子动力学模拟来研究木聚糖在 XOAT1 结合裂隙中的最佳取向,并确定参与底物相互作用的潜在关键残基(小叶片上的 Gln445 和 Arg444 和大叶片上的 Asn312、Met311 和 Asp403)。定点诱变结合生化分析表明,XOAT1 的大亚基对于木聚糖结合很重要。单个关键残基的突变产生了具有不同酶效率的 XOAT1 变体,可适用于一锅法合成具有不同 O-乙酰化程度的木聚糖聚合物。总之,我们的结果表明计算建模在指导酶工程以调节木聚糖和重新设计植物细胞壁方面的有效性。