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网络药理学结合分子对接技术探讨柚皮苷通过调节氧化应激抗骨质疏松性骨折的机制

Network Pharmacology Integrated with Molecular Docking Explores the Mechanisms of Naringin against Osteoporotic Fracture by Regulating Oxidative Stress.

作者信息

Yu Xiang, Zhang Peng, Tang Kai, Shen Gengyang, Chen Honglin, Zhang Zhida, Zhao Wenhua, Shang Qi, Zhu Guangye, Tan Riwei, Gan Yanchi, Zhang You, Liang De, Ren Hui, Jiang Xiaobing, Zhou Bengen

机构信息

The First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou 510405, China.

Guangzhou University of Chinese Medicine, Guangzhou 510405, China.

出版信息

Evid Based Complement Alternat Med. 2021 Sep 20;2021:6421122. doi: 10.1155/2021/6421122. eCollection 2021.

DOI:10.1155/2021/6421122
PMID:34589132
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8476256/
Abstract

Naringin (NG), as the most abundant component of (Chinese name: Gusuibu), has been proved to be an antioxidant flavonoid on promoting osteoporotic fracture (OF) healing, but relevant research is scanty on the underlying mechanisms. We adopted target prediction, protein-protein interaction (PPI) analysis, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, and molecular docking to establish a system pharmacology database of NG against OF. Totally 105 targets of naringin were obtained, including 26 common targets with OF. A total of 415 entries were obtained through GO Biological Process enrichment analysis ( < 0.05), and 37 entries were obtained through KEGG pathway enrichment analysis with seven signaling pathways included ( < 0.05), which were primarily concerned with p53, IL-17, TNF, estrogen, and PPAR signaling pathways. According to the results of molecular docking, naringin is all bound in the active pockets of the core targets with 3-9 hydrogen bonds through some connections such as hydrophobic interactions, Pi-Pi stacked interactions, and salt bridge, demonstrating that naringin binds tightly to the core targets. In general, naringin may treat OF through multiple targets and multiple pathways via regulating oxidative stress, etc. Notably, it is first reported that NG may regulate osteoclast differentiation and oxidative stress through the expression of the core targets so as to treat OF.

摘要

柚皮苷(NG)作为骨碎补(中文名)中含量最丰富的成分,已被证明是一种促进骨质疏松性骨折(OF)愈合的抗氧化类黄酮,但关于其潜在机制的相关研究较少。我们采用靶点预测、蛋白质-蛋白质相互作用(PPI)分析、基因本体论(GO)分析、京都基因与基因组百科全书(KEGG)分析以及分子对接,建立了NG治疗OF的系统药理学数据库。共获得105个柚皮苷靶点,其中包括26个与OF的共同靶点。通过GO生物过程富集分析获得415个条目(P<0.05),通过KEGG通路富集分析获得37个条目,包括7条信号通路(P<0.05),主要涉及p53、IL-17、TNF、雌激素和PPAR信号通路。根据分子对接结果,柚皮苷通过疏水相互作用、π-π堆积相互作用和盐桥等一些连接方式,均以3-9个氢键结合在核心靶点的活性口袋中,表明柚皮苷与核心靶点紧密结合。总体而言,柚皮苷可能通过调节氧化应激等多个靶点和多条途径治疗OF。值得注意的是,首次报道NG可能通过核心靶点的表达调节破骨细胞分化和氧化应激从而治疗OF。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/8476256/6c1da28eed2a/ECAM2021-6421122.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/8476256/a24bbb2616ff/ECAM2021-6421122.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/8476256/9f6b8b54718a/ECAM2021-6421122.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/8476256/6c1da28eed2a/ECAM2021-6421122.003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/8476256/a24bbb2616ff/ECAM2021-6421122.001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/8476256/9f6b8b54718a/ECAM2021-6421122.002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/8476256/6c1da28eed2a/ECAM2021-6421122.003.jpg

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