基于网络药理学和实验验证的研究探讨了莪术-砂仁对胃癌的作用和机制。

Network pharmacology and experimental verification based research into the effect and mechanism of Aucklandiae Radix-Amomi Fructus against gastric cancer.

机构信息

Affiliated Hospital of Nanjing University of Chinese Medicine, Nanjing, 210029, Jiangsu, China.

Nanjing University of Chinese Medicine, Nanjing, 210029, Jiangsu, China.

出版信息

Sci Rep. 2022 Jun 7;12(1):9401. doi: 10.1038/s41598-022-13223-z.

Abstract

To investigate the mechanism of the Aucklandiae Radix-Amomi Fructus (AR-AF) herb pair in treating gastric cancer (GC) by using network pharmacology and experimental verification. Using the traditional Chinese medicine system pharmacology database and analysis platform (TCMSP), the major active components and their corresponding targets were estimated and screened out. Using Cytoscape 3.7.2 software, a visual network was established using the active components of AR-AF and the targets of GC. Based on STRING online database, the protein interaction network of vital targets was built and analyzed. With the Database for Annotation, Visualization, and Integrated Discovery (DAVID) server, the gene ontology (GO) biological processes and the Kyoto Encyclopedia of Genes and Genomes (KEGG) signaling pathways of the target enrichment were performed. AutoDock Vina was used to perform molecular docking and calculate the binding affinity. The mRNA and protein expression levels of the hub targets were analyzed by the Oncomine, GEPIA, HPA databases and TIMER online tool, and the predicted targets were verified by qRT-PCR in vitro. Eremanthin, cynaropicrin, and aceteugenol were identified as vital active compounds, and AKT1, MAPK3, IL6, MAPK1, as well as EGFR were considered as the major targets. These targets exerted therapeutic effects on GC by regulating the cAMP signaling pathway, and PI3K-Akt signaling pathway. Molecular docking revealed that these active compounds and targets showed good binding interactions. The validation in different databases showed that most of the results were consistent with this paper. The experimental results confirmed that eremanthin could inhibit the proliferation of AGS by reducing the mRNA expression of hub targets. As predicted by network pharmacology and validated by the experimental results, AR-AF exerts antitumor effects through multiple components, targets, and pathways, thereby providing novel ideas and clues for the development of preparations and the treatment of GC.

摘要

运用网络药理学和实验验证的方法,研究了莪术-砂仁药对治疗胃癌(GC)的作用机制。利用中药系统药理学数据库与分析平台(TCMSP),估算并筛选出莪术-砂仁药对的主要活性成分及其相应的靶点。运用 Cytoscape 3.7.2 软件,基于 AR-AF 的活性成分和 GC 的靶点构建可视化网络。基于 STRING 在线数据库构建并分析关键靶点的蛋白质相互作用网络。借助 DAVID 服务器对靶点进行基因本体(GO)生物过程和京都基因与基因组百科全书(KEGG)信号通路富集分析。运用 AutoDock Vina 进行分子对接并计算结合亲和力。利用 Oncomine、GEPIA、HPA 数据库和 TIMER 在线工具分析关键靶基因的 mRNA 和蛋白表达水平,并通过体外 qRT-PCR 对预测靶点进行验证。鉴定出埃卡瑞丁、莪术呋喃二酮和丁香烯醇为重要的活性化合物,AKT1、MAPK3、IL6、MAPK1 和 EGFR 被认为是主要的靶点。这些靶点通过调节 cAMP 信号通路和 PI3K-Akt 信号通路对 GC 发挥治疗作用。分子对接显示这些活性化合物和靶点之间具有良好的结合相互作用。在不同数据库中的验证结果表明,大多数结果与本文一致。实验结果证实,埃卡瑞丁通过降低关键靶基因的 mRNA 表达来抑制 AGS 的增殖。正如网络药理学预测并通过实验结果验证的那样,莪术-砂仁药对通过多种成分、靶点和通路发挥抗肿瘤作用,从而为制剂的开发和 GC 的治疗提供了新的思路和线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3205/9174187/64ebc42ad17d/41598_2022_13223_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索