National Institute of Malaria Research, Sector 8, Dwarka, Delhi, 110077, India.
National Institute of Malaria Research, Sector 8, Dwarka, Delhi, 110077, India.
Acta Trop. 2021 Dec;224:106149. doi: 10.1016/j.actatropica.2021.106149. Epub 2021 Sep 30.
Anopheles fluviatilis sensu lato, a primary malaria vector in India, has been identified to be comprised of four cryptic species, provisionally designated as species S, T, U and V. However, Kumar et al. (Mol Ecol Resour, 2013;13:354-61) considered all of the then known three members of this species complex (S, T and U) conspecific. The specific status of species S and T was refuted based on the lack of sufficient barcode gap in mitochondrial-CO1 and the perceived presence of heterozygotes in populations as detected through one of the two species-specific PCR assays employed for the cryptic species identification. The existence of species U was refuted claiming that earlier investigations have already refuted their existence. Here we discuss problems associated with the CO1-based barcode approach for delimitation of cryptic species, the perceived heterozygosity between species S and T based on a species-specific PCR assay, and interpretation of published reports. We demonstrated that fixed differences do exist in the ITS2-rDNA sequence of species S and T with no evidence of heterozygotes in sympatric populations and, that the observed heterozygosity by Kumar et al. in the ITS2-based species diagnostic PCR is due to the high mispriming tendency of the T-specific primer with species S. We infer that mitochondrial DNA-based 'barcoding gap', an arbitrary threshold recommended for species delimitation, alone, is inadequate to delimit the members of An. fluviatilis complex.
按蚊属长角亚种,印度的主要疟疾媒介,已被确定由四个隐种组成,暂定为种 S、T、U 和 V。然而,Kumar 等人(分子生态学资源,2013 年;13:354-61)认为该物种复合体的所有已知三个成员(S、T 和 U)都是同种的。种 S 和 T 的种特异性是根据线粒体 CO1 中缺乏足够的条码间隙以及在种群中检测到的杂合子的存在来反驳的,这种杂合子的存在是通过使用两种用于隐种鉴定的种特异性 PCR 分析之一来检测到的。种 U 的存在被反驳,声称早期的调查已经反驳了它们的存在。在这里,我们讨论了基于 CO1 的条码方法在隐种划分中的问题、基于种特异性 PCR 分析的种 S 和 T 之间感知到的杂合性以及对已发表报告的解释。我们证明,种 S 和 T 的 ITS2-rDNA 序列确实存在固定差异,在同域种群中没有杂合子的证据,并且,Kumar 等人在基于 ITS2 的种诊断 PCR 中观察到的杂合性是由于 T 特异性引物与种 S 的高错配倾向。我们推断,基于线粒体 DNA 的“条码间隙”,即推荐用于物种划分的任意阈值,单独用于划分按蚊属复合体的成员是不够的。