• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

三域 NDP-庚糖合成酶在放线菌中的保守分布。

A conservative distribution of tridomain NDP-heptose synthetases in actinobacteria.

机构信息

State Key Laboratory of Microbial Resources and CAS Key Laboratory of Microbial Physiological and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

University of Chinese Academy of Sciences, Beijing, 100049, China.

出版信息

Sci China Life Sci. 2022 May;65(5):1014-1023. doi: 10.1007/s11427-021-2000-2. Epub 2021 Oct 8.

DOI:10.1007/s11427-021-2000-2
PMID:34632535
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8502628/
Abstract

Heptoses are important structural components of Gram-negative bacterium cell wall and participate in bacterial colonization, infection, and immune recognition. Current knowledge of NDP-heptose originating from D-sedoheptulose 7-phosphate in Grampositive bacterium remains limited. Here, in silico analysis suggested that the special tridomain NDP-heptose synthetases with isomerase, kinase, and nucleotidyltransferase activities are conservatively distributed in Actinobacteria class of Gram-positive bacterium. Enzymatical characterization of the tridomain proteins from different strains showed that they are involved in ADP-D-glycero-β-D-manno-heptose biosynthesis despite the unexpected discovery of kinase activities deficient in some proteins. The presence of three types of NDP-heptose synthetases in Gram-positive bacterium suggests that it is also a rich source of heptoses and the heptose moieties may play important roles in vivo. Our work updates the understanding of NDP-heptose biosynthesis in Gram-positive bacterium and lays a solid foundation for further physiological function explorations.

摘要

庚糖是革兰氏阴性菌细胞壁的重要结构成分,参与细菌定植、感染和免疫识别。目前对革兰氏阳性菌中来源于 D-赤藓糖 7-磷酸的 NDP-庚糖的了解仍然有限。本文通过计算机分析表明,具有异构酶、激酶和核苷酸转移酶活性的特殊三域 NDP-庚糖合成酶在革兰氏阳性菌放线菌目中保守分布。来自不同菌株的三域蛋白的酶学特性表明,它们参与 ADP-D-甘油-β-D-甘露庚糖的生物合成,尽管在一些蛋白中发现了激酶活性缺失的意外情况。革兰氏阳性菌中存在三种类型的 NDP-庚糖合成酶,这表明它也是庚糖的丰富来源,庚糖部分可能在体内发挥重要作用。我们的工作更新了对革兰氏阳性菌中 NDP-庚糖生物合成的认识,并为进一步的生理功能探索奠定了坚实的基础。

相似文献

1
A conservative distribution of tridomain NDP-heptose synthetases in actinobacteria.三域 NDP-庚糖合成酶在放线菌中的保守分布。
Sci China Life Sci. 2022 May;65(5):1014-1023. doi: 10.1007/s11427-021-2000-2. Epub 2021 Oct 8.
2
Characterization of the ADP-β-D-manno-heptose biosynthetic enzymes from two pathogenic Vibrio strains.从两株致病弧菌中鉴定 ADP-β-D-甘露庚糖生物合成酶。
Appl Microbiol Biotechnol. 2024 Mar 18;108(1):267. doi: 10.1007/s00253-024-13108-3.
3
Biosynthesis of nucleotide-activated D-glycero-D-manno-heptose.核苷酸激活的D-甘油-D-甘露庚糖的生物合成。
J Biol Chem. 2001 Jun 15;276(24):20935-44. doi: 10.1074/jbc.M100378200. Epub 2001 Mar 28.
4
d-Sedoheptulose-7-phosphate is a common precursor for the heptoses of septacidin and hygromycin B.d-景天庚酮糖-7-磷酸是海绵霉素 B 和塞多杀菌素庚糖的共同前体。
Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2818-2823. doi: 10.1073/pnas.1711665115. Epub 2018 Feb 26.
5
Helicobacter pylori Modulates Heptose Metabolite Biosynthesis and Heptose-Dependent Innate Immune Host Cell Activation by Multiple Mechanisms.幽门螺旋杆菌通过多种机制调节庚糖代谢物的生物合成和庚糖依赖性固有免疫宿主细胞的激活。
Microbiol Spectr. 2023 Jun 15;11(3):e0313222. doi: 10.1128/spectrum.03132-22. Epub 2023 Apr 27.
6
Expression and crystallographic studies of D-glycero-β-D-manno-heptose-1-phosphate adenylyltransferase from Burkholderia pseudomallei.来自类鼻疽伯克霍尔德菌的D-甘油-β-D-甘露庚糖-1-磷酸腺苷酸转移酶的表达及晶体学研究
Acta Crystallogr F Struct Biol Commun. 2017 Feb 1;73(Pt 2):90-94. doi: 10.1107/S2053230X16020537. Epub 2017 Jan 19.
7
ADP-heptose: A new innate immune modulator.ADP-庚糖:一种新型先天性免疫调节剂。
Carbohydr Res. 2019 Feb 1;473:123-128. doi: 10.1016/j.carres.2018.12.011. Epub 2018 Dec 19.
8
Divergence of biochemical function in the HAD superfamily: D-glycero-D-manno-heptose-1,7-bisphosphate phosphatase (GmhB).HAD 超家族中生化功能的差异:D-甘油-D-甘露庚糖-1,7-二磷酸磷酸酶(GmhB)。
Biochemistry. 2010 Feb 16;49(6):1072-81. doi: 10.1021/bi902018y.
9
Recognition of heptoses and the inner core of bacterial lipopolysaccharides by surfactant protein d.表面活性蛋白D对庚糖及细菌脂多糖内核的识别。
Biochemistry. 2008 Jan 15;47(2):710-20. doi: 10.1021/bi7020553. Epub 2007 Dec 20.
10
Biosynthesis of d--l--Heptose in the Capsular Polysaccharides of .在荚膜多糖中 D- L-庚糖的生物合成。
Biochemistry. 2021 May 18;60(19):1552-1563. doi: 10.1021/acs.biochem.1c00183. Epub 2021 Apr 26.

引用本文的文献

1
NDP-β-d-manno-heptoses are small molecule agonists sensed by the vertebrates to discriminate organisms of different kingdoms.NDP-β-D-甘露庚糖是脊椎动物用来区分不同界生物的小分子激动剂。
Clin Transl Med. 2024 Nov;14(11):e70103. doi: 10.1002/ctm2.70103.
2
The Biotransformation and Influence on the Functional Activities of Metabolites during the Fermentation of Wall. Juice by subsp. HN-3.嗜酸乳杆菌HN-3对山楂汁发酵过程中生物转化及代谢产物功能活性的影响
Foods. 2024 Mar 19;13(6):926. doi: 10.3390/foods13060926.
3
Characterization of the ADP-β-D-manno-heptose biosynthetic enzymes from two pathogenic Vibrio strains.从两株致病弧菌中鉴定 ADP-β-D-甘露庚糖生物合成酶。
Appl Microbiol Biotechnol. 2024 Mar 18;108(1):267. doi: 10.1007/s00253-024-13108-3.
4
Insights into the biosynthesis of septacidin l-heptosamine moiety unveils a VOC family sugar epimerase.对七肽菌素L-庚糖胺部分生物合成的深入了解揭示了一个挥发性有机化合物家族糖差向异构酶。
Acta Pharm Sin B. 2023 Feb;13(2):765-774. doi: 10.1016/j.apsb.2022.05.031. Epub 2022 Jun 3.

本文引用的文献

1
Heptose-containing bacterial natural products: structures, bioactivities, and biosyntheses.含庚糖的细菌天然产物:结构、生物活性和生物合成。
Nat Prod Rep. 2021 Oct 20;38(10):1887-1909. doi: 10.1039/d0np00075b.
2
Deciphering the Biosynthesis of TDP-β-l-oleandrose in Avermectin.解析阿维菌素中TDP-β-L-夹竹桃糖的生物合成
J Nat Prod. 2020 Oct 23;83(10):3199-3206. doi: 10.1021/acs.jnatprod.0c00902. Epub 2020 Sep 24.
3
Characterization of SepE and SepF for the -Glycosylated Adenine Structure Formation in Septacidin Biosynthesis.分离素生物合成中-Glycosylated Adenine 结构形成的 SepE 和 SepF 的特性研究。
Org Lett. 2020 Jul 2;22(13):5251-5254. doi: 10.1021/acs.orglett.0c01918. Epub 2020 Jun 21.
4
Biosynthesis of GDP-d--α-d--heptose for the Capsular Polysaccharide of .用于 荚膜多糖的 GDP-D--α-D--庚糖的生物合成。
Biochemistry. 2019 Sep 17;58(37):3893-3902. doi: 10.1021/acs.biochem.9b00548. Epub 2019 Aug 29.
5
ADP-heptose: A new innate immune modulator.ADP-庚糖:一种新型先天性免疫调节剂。
Carbohydr Res. 2019 Feb 1;473:123-128. doi: 10.1016/j.carres.2018.12.011. Epub 2018 Dec 19.
6
Alpha-kinase 1 is a cytosolic innate immune receptor for bacterial ADP-heptose.α-激酶 1 是一种胞质固有免疫受体,可识别细菌 ADP-庚糖。
Nature. 2018 Sep;561(7721):122-126. doi: 10.1038/s41586-018-0433-3. Epub 2018 Aug 15.
7
Polysaccharides from Burkholderia species as targets for vaccine development, immunomodulation and chemical synthesis.伯克霍尔德氏菌属多糖作为疫苗开发、免疫调节和化学合成的靶标。
Nat Prod Rep. 2018 Dec 12;35(12):1251-1293. doi: 10.1039/c8np00046h.
8
d-Sedoheptulose-7-phosphate is a common precursor for the heptoses of septacidin and hygromycin B.d-景天庚酮糖-7-磷酸是海绵霉素 B 和塞多杀菌素庚糖的共同前体。
Proc Natl Acad Sci U S A. 2018 Mar 13;115(11):2818-2823. doi: 10.1073/pnas.1711665115. Epub 2018 Feb 26.
9
Crystal structure of D-glycero-Β-D-manno-heptose-1-phosphate adenylyltransferase from Burkholderia pseudomallei.来自类鼻疽伯克霍尔德菌的D-甘油-β-D-甘露庚糖-1-磷酸腺苷酰转移酶的晶体结构
Proteins. 2018 Jan;86(1):124-131. doi: 10.1002/prot.25398. Epub 2017 Oct 31.
10
Discovery and Characterization of a New Family of Diterpene Cyclases in Bacteria and Fungi.发现和鉴定细菌和真菌中新型二萜环化酶家族。
Angew Chem Int Ed Engl. 2017 Apr 18;56(17):4749-4752. doi: 10.1002/anie.201700565. Epub 2017 Mar 28.