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采用静电嵌入 TD-DFT/MM 方法研究质子化极性纳米液滴中胸腺嘧啶的光化学

Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM.

机构信息

Aix-Marseille University, CNRS, ICR, 13397 Marseille, France.

出版信息

Molecules. 2021 Oct 4;26(19):6021. doi: 10.3390/molecules26196021.

Abstract

Thymine photochemistry is important for understanding DNA photodamage. In the gas phase, thymine undergoes a fast non-radiative decay from S2 to S1. In the S1 state, it gets trapped for several picoseconds until returning to the ground-state S0. Here, we explore the electrostatic effects of nanomeric droplets of methanol and water on the excited states of thymine. For this purpose, we develop and implement an electrostatic embedding TD-DFT/MM method based on a QM/MM coupling defined through electrostatic potential fitting charges. We show that both in methanol and water, the mechanism is similar to the gas phase. The solvent molecules participate in defining the branching plane of S0/S1 intersection and have a negligible effect on the S1/S2 intersection. Despite the wrong topology of the ground/excited state intersections, electrostatic embedding TD-DFT/MM allows for a fast exploration of the potential energy surfaces and a qualitative picture of the photophysics of thymine in solvent droplets.

摘要

胸腺嘧啶光化学对于理解 DNA 光损伤很重要。在气相中,胸腺嘧啶从 S2 到 S1 经历快速的非辐射衰减。在 S1 态下,它会被捕获几皮秒,直到回到基态 S0。在这里,我们探索了甲醇和水的纳米级液滴对胸腺嘧啶激发态的静电效应。为此,我们开发并实现了一种基于通过静电势拟合电荷定义的 QM/MM 耦合的静电嵌入 TD-DFT/MM 方法。我们表明,在甲醇和水中,机制与气相相似。溶剂分子参与定义 S0/S1 交叉的分支平面,对 S1/S2 交叉的影响可以忽略不计。尽管基态/激发态交叉的拓扑结构不正确,但静电嵌入 TD-DFT/MM 允许快速探索势能表面,并对溶剂液滴中胸腺嘧啶的光物理性质进行定性描述。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68b6/8513085/db966c6ec594/molecules-26-06021-g001.jpg

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