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基于数据挖掘的髓核退变发病机制中miRNA调控网络的初步构建——综述

Preliminary construction of a regulatory network of miRNAs in the pathogenesis of nucleus pulposus degeneration - a review based on data mining.

作者信息

Guo Yingjun, Wang Xiaofei, Liu Hao, Wang Beiyu, Meng Yang, Ding Chen

机构信息

Department of Orthopedic Surgery, West China Hospital, Sichuan University Chengdu 610041, Sichuan, China.

出版信息

Am J Transl Res. 2021 Sep 15;13(9):9919-9931. eCollection 2021.

Abstract

In this study, we attempted to further collate existing transcriptome sequencing (mRNA-Seq) data by applying data mining and screening intervertebral disc degeneration (IVDD)-related miRNAs. At the same time, combined with published articles, the miRNAs that have been screened out were further excluded, and only the miRNAs confirmed by the reported studies were retained and reviewed. We obtained 12 pro-IVDD miRNAs and ten anti-IVDD miRNAs using the above screening process, involving 33 literature sources. By reviewing and summarizing the above studies, we preliminarily constructed the regulatory network of miRNA in the pathogenesis of IVDD. This regulatory network comprises many gaps and potential miRNA interactions, and these points may be the breakthrough points for further IVDD-related research. This new review approach can also provide a reference for the mechanistic studies of other diseases.

摘要

在本研究中,我们试图通过数据挖掘和筛选与椎间盘退变(IVDD)相关的微小RNA(miRNA),进一步整理现有的转录组测序(mRNA-Seq)数据。同时,结合已发表的文章,对筛选出的miRNA进行进一步排除,仅保留经报道研究证实的miRNA并进行综述。通过上述筛选过程,我们获得了12种促IVDD的miRNA和10种抗IVDD的miRNA,涉及33个文献来源。通过对上述研究进行综述和总结,我们初步构建了miRNA在IVDD发病机制中的调控网络。该调控网络存在许多空白和潜在的miRNA相互作用,这些点可能是进一步开展IVDD相关研究的突破点。这种新的综述方法也可为其他疾病的机制研究提供参考。

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