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S100P 的上调预示着胰腺癌患者长期生存不良,并构建了用于生存和免疫治疗的预后特征。

Up-regulation of S100P predicts the poor long-term survival and construction of prognostic signature for survival and immunotherapy in patients with pancreatic cancer.

机构信息

Medical School of Chinese PLA, Beijing, China.

Faculty of Hepato-Pancreato-Biliary Surgery, The First Medical Center of Chinese People's Liberation Army (PLA) General Hospital, Beijing, China.

出版信息

Bioengineered. 2021 Dec;12(1):9006-9020. doi: 10.1080/21655979.2021.1992331.

DOI:10.1080/21655979.2021.1992331
PMID:34654352
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8806945/
Abstract

Pancreatic cancer is associated with a high mortality rate, and the prognosis is positively related to immune status. In this study, we constructed a prognostic signature from survival- and immune-related genes (IRGs) to guide treatment and assess prognosis of patients with pancreatic cancer. The transcriptomic data were obtained from The Cancer Genome Atlas (TCGA) database, and IRGs were extracted from the ImmPort database. Univariate and LASSO regression analysis were used to obtain survival-related IRGs. Finally, the prognostic signature was constructed using multivariate regression analysis. The laboratory experiments were conducted to verify the key IRG expression. Immune cells infiltration was analyzed using the CIBERSORT algorithm and TIMER database. Prognostic signature containing four IRGs (ADA2, TLR1, PTPN6, S100P) was constructed with good predictive performance; in particular, S100P played a significant role in the immune microenvironment, and tumorigenesis of pancreatic cancer. Moreover, we found that CD8 T cell and activated CD4 memory T cell tumor infiltration was lower in the high-risk group, while high-risk score correlated positively with higher tumor mutational burden, and the higher half inhibitory centration 50 of chemotherapeutic agents Docetaxel and Sunitinib. In summary, this study identified and constructed an immune-related prognostic signature that can predict overall survival, besides suggests that S100P was a novel immune-related biomarker. We hope that this signature will aid the identification of new biomarkers for the individualized immunotherapy of pancreatic cancer.

摘要

胰腺癌死亡率高,预后与免疫状态呈正相关。本研究构建了一个基于生存和免疫相关基因(IRGs)的预后标志物,以指导治疗和评估胰腺癌患者的预后。转录组数据来自癌症基因组图谱(TCGA)数据库,IRGs 从 ImmPort 数据库中提取。采用单因素和 LASSO 回归分析获得与生存相关的 IRGs。最后,采用多因素回归分析构建预后标志物。通过实验室实验验证关键 IRG 的表达。使用 CIBERSORT 算法和 TIMER 数据库分析免疫细胞浸润。构建了包含 4 个 IRG(ADA2、TLR1、PTPN6、S100P)的预后标志物,具有良好的预测性能;特别是 S100P 在免疫微环境和胰腺癌发生中起重要作用。此外,我们发现高危组 CD8 T 细胞和激活的 CD4 记忆 T 细胞肿瘤浸润较低,而高危评分与较高的肿瘤突变负担呈正相关,并且半数抑制浓度 50 的化疗药物多西他赛和舒尼替尼较高。总之,本研究鉴定并构建了一个与免疫相关的预后标志物,可预测总生存期,此外表明 S100P 是一种新的免疫相关生物标志物。我们希望这个标志物将有助于识别胰腺癌个体化免疫治疗的新生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/7d05ef645566/KBIE_A_1992331_F0009_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/4e5f5e13062a/KBIE_A_1992331_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/8130ef40f54f/KBIE_A_1992331_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/9bdfce16885b/KBIE_A_1992331_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/3548cd863812/KBIE_A_1992331_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/a86a9003cd7b/KBIE_A_1992331_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/d5f032564e82/KBIE_A_1992331_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/6d923e953b75/KBIE_A_1992331_F0007_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/da1d0ad5d822/KBIE_A_1992331_F0008_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/7d05ef645566/KBIE_A_1992331_F0009_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/4e5f5e13062a/KBIE_A_1992331_F0001_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/8130ef40f54f/KBIE_A_1992331_F0002_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/9bdfce16885b/KBIE_A_1992331_F0003_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/3548cd863812/KBIE_A_1992331_F0004_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/a86a9003cd7b/KBIE_A_1992331_F0005_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/d5f032564e82/KBIE_A_1992331_F0006_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/6d923e953b75/KBIE_A_1992331_F0007_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/da1d0ad5d822/KBIE_A_1992331_F0008_OC.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4cc0/8806945/7d05ef645566/KBIE_A_1992331_F0009_OC.jpg

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本文引用的文献

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Front Med (Lausanne). 2021 Apr 1;8:649326. doi: 10.3389/fmed.2021.649326. eCollection 2021.
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Identification of an Immune-Related Signature for Predicting Prognosis in Patients With Pancreatic Ductal Adenocarcinoma.用于预测胰腺导管腺癌患者预后的免疫相关特征的鉴定
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Exploring the significance of novel immune-related gene signatures in the prognosis and immune features of pancreatic adenocarcinoma.
QN-302 在 S100P 基因启动子中展示了 i-motif 和 G-四链体 DNA 结构之间的相反作用。
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S100P as a potential biomarker for immunosuppressive microenvironment in pancreatic cancer: a bioinformatics analysis and in vitro study.S100P 作为胰腺癌免疫抑制微环境的潜在生物标志物:生物信息学分析和体外研究。
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The role of BHLHE40 in clinical features and prognosis value of PDAC by comprehensive analysis and validation.通过综合分析和验证,探讨BHLHE40在胰腺导管腺癌临床特征及预后价值中的作用。
Front Oncol. 2023 Jun 12;13:1151321. doi: 10.3389/fonc.2023.1151321. eCollection 2023.
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The Potent G-Quadruplex-Binding Compound QN-302 Downregulates S100P Gene Expression in Cells and in an In Vivo Model of Pancreatic Cancer.强效 G-四链体结合化合物 QN-302 下调胰腺癌细胞和体内模型中 S100P 基因的表达。
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