Department of Pharmaceutical Sciences, University of Connecticut, Storrs, CT, United States.
Graduate Program in Pharmacology and Toxicology, Department of Pharmaceutical Sciences, University of Connecticut, Storrs, CT, United States.
Prog Mol Biol Transl Sci. 2021;183:101-134. doi: 10.1016/bs.pmbts.2021.06.002. Epub 2021 Jul 6.
The well-defined roles and specific protein-protein interactions of many integral membrane proteins (IMPs), such as those functioning as receptors for extracellular matrix proteins and soluble growth factors, easily align with considering IMP structure as a classical "lock-and-key" concept. Nevertheless, continued advances in understanding protein conformation, such as those which established the widespread existence of intrinsically disordered proteins (IDPs) and especially intrinsically disordered regions (IDRs) in otherwise three-dimensionally organized proteins, call for ongoing reevaluation of transmembrane proteins. Here, we present basic traits of IDPs and IDRs, and, for some select single-span IMPs, consider the potential functional advantages intrinsic disorder might provide and the possible conformational impact of disease-associated mutations. For transmembrane proteins in general, we highlight several investigational approaches, such as biophysical and computational methods, stressing the importance of integrating them to produce a more-complete mechanistic model of disorder-containing IMPs. These procedures, when synergized with in-cell assessments, will likely be key in translating in silico and in vitro results to improved understanding of IMP conformational flexibility in normal cell physiology as well as disease, and will help to extend their potential as therapeutic targets.
许多完整膜蛋白(IMP)的角色明确且蛋白-蛋白相互作用特异性强,比如那些作为细胞外基质蛋白和可溶性生长因子受体发挥作用的蛋白,这使得将 IMP 结构视为经典的“锁钥”概念变得轻而易举。然而,人们对蛋白质构象的理解不断深入,例如普遍存在的无规则蛋白(IDP)和特别是在其他三维组织蛋白中存在的无规则区域(IDR),这要求我们持续重新评估跨膜蛋白。在这里,我们介绍了 IDP 和 IDR 的基本特征,并针对一些选定的单跨 IMP,考虑了无序可能提供的潜在功能优势,以及与疾病相关的突变可能产生的构象影响。对于一般的跨膜蛋白,我们强调了几种研究方法,如生物物理和计算方法,强调了将它们整合以产生包含无序 IMP 的更完整的机械模型的重要性。这些程序与细胞内评估相结合,可能是将计算机模拟和体外结果转化为对 IMP 构象灵活性在正常细胞生理学以及疾病中的更好理解的关键,并有助于扩展它们作为治疗靶点的潜力。