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评估濒危 Rough Hornsnail(Pleurocera Foremani)在生境破坏后的基因组多样性、连通性和河流景观遗传学假说。

Assessing Genomic Diversity, Connectivity, and Riverscape Genetics Hypotheses in the Endangered Rough Hornsnail, Pleurocera Foremani, Following Habitat Disruption.

机构信息

Department of Biological Sciences, Auburn University, Auburn, AL, USA.

Southeast Conservation Genetics Lab, Warm Springs Fish Technology Center, United States Fish and Wildlife Service, Auburn, AL, USA.

出版信息

J Hered. 2021 Dec 17;112(7):635-645. doi: 10.1093/jhered/esab065.

DOI:10.1093/jhered/esab065
PMID:34673971
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8683363/
Abstract

The southeastern United States is home to some of the richest biodiversity in the world. Over the last 200 years, however, rapid industrialization and urbanization have threatened many natural areas, including freshwater habitats. River impoundments have also rapidly altered freshwater habitats, often resulting in species extirpation or extinction. The Coosa River in Alabama experienced one of the largest faunal declines in modern history after impoundment, making it an ideal system for studying how invertebrate species are affected by reservoir creation. One such species, the Rough Hornsnail, Pleurocera foremani, is an endangered freshwater snail in the family Pleuroceridae. We sampled all known localities of P. foremani and used 2bRAD-seq to measure genetic diversity. We assessed riverscape genomic patterns across the current range of P. foremani and measured gene flow within and between impoundments. We also investigated the degree to which P. foremani displays an isolation by distance pattern and conforms to broad hypotheses that have been put forth for population genetics of riverine species like the Mighty Headwater Hypothesis that predicts greater genetic diversity in headwater reaches compared with mainstem populations. Like most other freshwater species, a pattern of isolation by distance was observed in P. foremani. We also found that Coosa River dams are a barrier to gene flow, and genetic fragmentation of P. foremani is likely to increase. However, gene flow appeared common within reservoirs and tributaries. Additionally, we found that spatial genetic structure of P. foremani deviates from what is expected under the Mighty Headwaters Hypothesis, adding to a growing body of research suggesting that the majority of genetic diversity in low-dispersing gastropods is found in mainstem populations.

摘要

美国东南部是世界上生物多样性最丰富的地区之一。然而,在过去的 200 年里,快速的工业化和城市化威胁到了许多自然区域,包括淡水栖息地。河流筑坝也迅速改变了淡水栖息地,常常导致物种灭绝或消失。阿拉巴马州的库萨河在筑坝后经历了现代历史上最大的动物群衰退之一,使其成为研究水库建设如何影响无脊椎动物物种的理想系统。其中一种物种,粗角石蜗牛,Pleurocera foremani,是 Pleuroceridae 家族中一种濒危的淡水蜗牛。我们对所有已知的 P. foremani 地点进行了采样,并使用 2bRAD-seq 来衡量遗传多样性。我们评估了 P. foremani 当前分布范围内的河流景观基因组模式,并测量了坝内和坝间的基因流动。我们还研究了 P. foremani 表现出距离隔离模式的程度,并符合已经提出的河流物种群体遗传学的广泛假设,例如,预测与干流种群相比,上游支流的遗传多样性更大的强大源头假说。与大多数其他淡水物种一样,在 P. foremani 中观察到了距离隔离的模式。我们还发现库萨河大坝是基因流动的障碍,P. foremani 的遗传片段化可能会增加。然而,基因流动在水库和支流内部似乎很常见。此外,我们发现 P. foremani 的空间遗传结构偏离了强大源头假说的预期,这增加了越来越多的研究表明,低扩散腹足动物的大部分遗传多样性存在于干流种群中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/bc4b4a013dd5/esab065_fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/bc06463b0095/esab065_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/714568f196c2/esab065_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/08bc904c66c2/esab065_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/e2cfdaa7a609/esab065_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/bc4b4a013dd5/esab065_fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/bc06463b0095/esab065_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/714568f196c2/esab065_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/08bc904c66c2/esab065_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/e2cfdaa7a609/esab065_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ad/8683363/bc4b4a013dd5/esab065_fig5.jpg

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本文引用的文献

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Range reduction of Oblong Rocksnail, , shapes riverscape genetic patterns.长形石螺的分布范围缩小塑造了河流景观的遗传模式。
PeerJ. 2020 Sep 1;8:e9789. doi: 10.7717/peerj.9789. eCollection 2020.
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