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系统搜索与阿尔茨海默病细胞外囊泡相关的新型循环生物标志物:结合文献筛选和数据库挖掘方法

Systematic Search for Novel Circulating Biomarkers Associated with Extracellular Vesicles in Alzheimer's Disease: Combining Literature Screening and Database Mining Approaches.

作者信息

Vogrinc David, Goričar Katja, Kunej Tanja, Dolžan Vita

机构信息

Pharmacogenetics Laboratory, Institute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia.

Department of Animal Science, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia.

出版信息

J Pers Med. 2021 Sep 23;11(10):946. doi: 10.3390/jpm11100946.

Abstract

miRNAs play an important role in neurodegenerative diseases. Many miRNA-target gene interactions (MTI) have been experimentally confirmed and associated with Alzheimer's disease (AD). miRNAs may also be contained within extracellular vesicles (EVs), mediators of cellular communication and a potential source of circulating biomarkers in body fluids. Therefore, EV-associated miRNAs (EV-miRNAs) in peripheral blood could support earlier and less invasive AD diagnostics. We aimed to prioritize EV-related miRNA with AD-related genes and to identify the most promising candidates for novel AD biomarkers. A list of unique EV-miRNAs from the literature was combined with a known set of AD risk genes and enriched for MTI. Additionally, miRNAs associated with the AD phenotype were combined with all known target genes in MTI enrichment. Expression in different sample types was analyzed to identify AD-associated miRNAs with the greatest potential as AD circulating biomarkers. Four common MTI were observed between EV-miRNAs and AD-associated miRNAs: hsa-miR-375-, hsa-miR-107-, hsa-miR-375-, and hsa-miR-107-. An additional 61 out of 169 unique miRNAs (36.1%) and seven out of 84 unique MTI (8.3%), observed in the body fluids of AD patients, were proposed as very strong AD-circulating biomarker candidates. Our analysis summarized several potential novel AD biomarkers, but further studies are needed to evaluate their potential in clinical practice.

摘要

微小RNA(miRNA)在神经退行性疾病中发挥着重要作用。许多miRNA-靶基因相互作用(MTI)已通过实验得到证实,并与阿尔茨海默病(AD)相关。miRNA也可能存在于细胞外囊泡(EV)中,细胞外囊泡是细胞间通讯的介质,也是体液中循环生物标志物的潜在来源。因此,外周血中与EV相关的miRNA(EV-miRNA)可能有助于更早且侵入性更小的AD诊断。我们旨在对与AD相关基因的EV相关miRNA进行优先级排序,并确定新型AD生物标志物最有前景的候选物。将文献中独特的EV-miRNA列表与已知的AD风险基因集相结合,并对MTI进行富集。此外,将与AD表型相关的miRNA与MTI富集中的所有已知靶基因相结合。分析不同样本类型中的表达,以鉴定具有最大潜力作为AD循环生物标志物的AD相关miRNA。在EV-miRNA和AD相关miRNA之间观察到四种常见的MTI:hsa-miR-375-、hsa-miR-107-、hsa-miR-375-和hsa-miR-107-。在AD患者的体液中观察到的169个独特miRNA中的另外61个(36.1%)和84个独特MTI中的7个(8.3%)被提议作为非常强大的AD循环生物标志物候选物。我们的分析总结了几种潜在的新型AD生物标志物,但需要进一步研究以评估它们在临床实践中的潜力。

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