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细胞外囊泡的多组学整合方法:一个未来具有挑战性的里程碑。

Multi-Omics Integrative Approach of Extracellular Vesicles: A Future Challenging Milestone.

作者信息

Shaba Enxhi, Vantaggiato Lorenza, Governini Laura, Haxhiu Alesandro, Sebastiani Guido, Fignani Daniela, Grieco Giuseppina Emanuela, Bergantini Laura, Bini Luca, Landi Claudia

机构信息

Functional Proteomics Lab, Department of Life Sciences, University of Siena, 53100 Siena, Italy.

Department of Molecular and Developmental Medicine, University of Siena, 53100 Siena, Italy.

出版信息

Proteomes. 2022 Apr 22;10(2):12. doi: 10.3390/proteomes10020012.

Abstract

In the era of multi-omic sciences, dogma on singular cause-effect in physio-pathological processes is overcome and system biology approaches have been providing new perspectives to see through. In this context, extracellular vesicles (EVs) are offering a new level of complexity, given their role in cellular communication and their activity as mediators of specific signals to target cells or tissues. Indeed, their heterogeneity in terms of content, function, origin and potentiality contribute to the cross-interaction of almost every molecular process occurring in a complex system. Such features make EVs proper biological systems being, therefore, optimal targets of omic sciences. Currently, most studies focus on dissecting EVs content in order to either characterize it or to explore its role in various pathogenic processes at transcriptomic, proteomic, metabolomic, lipidomic and genomic levels. Despite valuable results being provided by individual omic studies, the categorization of EVs biological data might represent a limit to be overcome. For this reason, a multi-omic integrative approach might contribute to explore EVs function, their tissue-specific origin and their potentiality. This review summarizes the state-of-the-art of EVs omic studies, addressing recent research on the integration of EVs multi-level biological data and challenging developments in EVs origin.

摘要

在多组学科学时代,生理病理过程中单一因果关系的教条被打破,系统生物学方法为深入研究提供了新的视角。在此背景下,细胞外囊泡(EVs)因其在细胞通讯中的作用以及作为向靶细胞或组织传递特定信号的介质的活性,呈现出一种新的复杂程度。事实上,它们在内容、功能、来源和潜力方面的异质性,促成了复杂系统中几乎所有分子过程的交叉相互作用。这些特性使EVs成为合适的生物系统,因此是组学科学的最佳研究对象。目前,大多数研究集中于剖析EVs的内容,以便在转录组学、蛋白质组学、代谢组学、脂质组学和基因组水平上对其进行表征或探索其在各种致病过程中的作用。尽管单个组学研究提供了有价值的结果,但EVs生物学数据的分类可能是一个有待克服的限制。因此,多组学整合方法可能有助于探索EVs的功能、它们的组织特异性来源及其潜力。本综述总结了EVs组学研究的现状,阐述了近期关于整合EVs多层次生物学数据的研究以及EVs起源方面的挑战性进展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2549/9149947/c355c88e0326/proteomes-10-00012-g001.jpg

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