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扁桃()中NAC转录因子家族的综合分析及其在果实发育过程中的差异基因表达

Comprehensive Analyses of NAC Transcription Factor Family in Almond () and Their Differential Gene Expression during Fruit Development.

作者信息

Zafar Zeeshan, Fatima Sidra, Bhatti Muhammad Faraz

机构信息

Atta-ur-Rahman School of Applied Bioscience, National University of Sciences and Technology, H-12, Kashmir Highway, Islamabad 44000, Pakistan.

出版信息

Plants (Basel). 2021 Oct 16;10(10):2200. doi: 10.3390/plants10102200.

Abstract

As plant specific transcription factors, NAC (NAM, ATAF1/2, CUC2) domain is involved in the plant development and stress responses. Due to the vitality of NAC gene family, BLASTp was performed to identify NAC genes in almond (). Further, phylogenetic and syntenic analyses were performed to determine the homology and evolutionary relationship. Gene duplication, gene structure, motif, subcellular localization, and -regulatory analyses were performed to assess the function of . Whereas RNA-seq analysis was performed to determine the differential expression of in fruits at various developmental stages. We identified 106 NAC genes in genome and were renamed according to their chromosomal distribution. Phylogenetic analysis in both and revealed the presence of 14 subfamilies. Motif and gene structure followed a pattern according to the position in phylogenetic subfamilies. Majority of NAC are localized in the nucleus and have ABA-responsive elements in the upstream region of . Differential gene expression analyses revealed one and six that were up and down-regulated, respectively, at all development stages. This study provides insights into the structure and function of along with their role in the fruit development to enhance an understanding of NAC in .

摘要

作为植物特异性转录因子,NAC(NAM、ATAF1/2、CUC2)结构域参与植物发育和胁迫反应。由于NAC基因家族的重要性,进行了BLASTp分析以鉴定杏仁中的NAC基因()。此外,进行了系统发育和共线性分析以确定同源性和进化关系。进行了基因复制、基因结构、基序、亚细胞定位和调控分析以评估()的功能。而进行RNA-seq分析以确定()在果实不同发育阶段的差异表达。我们在()基因组中鉴定出106个NAC基因,并根据它们的染色体分布重新命名。在()和()中的系统发育分析揭示了14个亚家族的存在。基序和基因结构根据其在系统发育亚家族中的位置呈现出一种模式。大多数NAC定位于细胞核,并且在()的上游区域具有ABA响应元件。差异基因表达分析揭示了在所有发育阶段分别有一个和六个()上调和下调。本研究深入了解了()的结构和功能以及它们在果实发育中的作用,以增强对()中NAC的理解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19bc/8541688/3e4be9ce050b/plants-10-02200-g001.jpg

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