• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

紫背金盘(唇形科)叶绿体全基因组特征分析

Characterization of the complete chloroplast genome of Diels (Lamiaceae).

作者信息

Du Yan, Wang Yuan-Yuan, Xiang Chun-Lei, Yang Mei-Qing

机构信息

Baotou Medical College, Baotou, Inner Mongolia, China.

Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming Yunnan, China.

出版信息

Mitochondrial DNA B Resour. 2021 Oct 20;6(11):3248-3249. doi: 10.1080/23802359.2021.1991243. eCollection 2021.

DOI:10.1080/23802359.2021.1991243
PMID:34693012
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8530471/
Abstract

The complete cp genome of Diels was 151,345 bp in length, including a large single-copy region (LSC) of 82,577 bp, a small single-copy region (SSC) of 17,584 bp and a pair of inverted repeats (IRs) of 25,592 bp. The genome contained 132 genes, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of this genome was 37.9%, with the corresponding values of LSC, SSC and IR regions being 36.0%, 31.7% and 43.1%, respectively. Further, the phylogenomic analysis strongly supported the sister relationship of and S R. Br.

摘要

迪尔斯(Diels)的完整叶绿体基因组长度为151,345碱基对,包括一个82,577碱基对的大单拷贝区域(LSC)、一个17,584碱基对的小单拷贝区域(SSC)和一对25,592碱基对的反向重复序列(IR)。该基因组包含132个基因,包括87个蛋白质编码基因、37个tRNA基因和8个rRNA基因。该基因组的总体GC含量为37.9%,LSC、SSC和IR区域的相应值分别为36.0%、31.7%和43.1%。此外,系统基因组学分析有力地支持了[具体物种]与[物种名称]S R. Br.的姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93ca/8530471/f01b92004480/TMDN_A_1991243_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93ca/8530471/f01b92004480/TMDN_A_1991243_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/93ca/8530471/f01b92004480/TMDN_A_1991243_F0001_C.jpg

相似文献

1
Characterization of the complete chloroplast genome of Diels (Lamiaceae).紫背金盘(唇形科)叶绿体全基因组特征分析
Mitochondrial DNA B Resour. 2021 Oct 20;6(11):3248-3249. doi: 10.1080/23802359.2021.1991243. eCollection 2021.
2
Characterization of the complete chloroplast genome of Vahl (Lamiaceae).瓦勒薄荷(唇形科)叶绿体全基因组的特征分析
Mitochondrial DNA B Resour. 2020 May 27;5(3):2174-2175. doi: 10.1080/23802359.2020.1768943. eCollection 2020.
3
The complete chloroplast genome and phylogenetic analysis of (Lamiaceae).唇形科(唇形科植物)的完整叶绿体基因组及系统发育分析
Mitochondrial DNA B Resour. 2022 Jul 28;7(7):1384-1386. doi: 10.1080/23802359.2022.2101398. eCollection 2022.
4
The complete chloroplast genome sequence of the medicinal plant C. H. Wright. (Lamiaceae).药用植物华鼠尾草(唇形科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2019 Oct 16;4(2):3603-3605. doi: 10.1080/23802359.2019.1677523.
5
The complete chloroplast genome sequence of , a medicinal plant for preventing and treating vascular dementia.一种用于预防和治疗血管性痴呆的药用植物的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2020 Jun 16;5(3):2460-2462. doi: 10.1080/23802359.2020.1778574.
6
The complete chloroplast genome of (Lamiaceae), an endemic species from China.唇形科一种中国特有物种的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2020 Jun 24;5(3):2568-2570. doi: 10.1080/23802359.2020.1781562.
7
The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza.药用植物丹参的完整叶绿体基因组序列。
PLoS One. 2013;8(2):e57607. doi: 10.1371/journal.pone.0057607. Epub 2013 Feb 27.
8
The complete chloroplast genome of Origanum vulgare L. (Lamiaceae).牛至(唇形科)的完整叶绿体基因组。
Gene. 2013 Oct 10;528(2):163-9. doi: 10.1016/j.gene.2013.07.026. Epub 2013 Jul 31.
9
Characterization of the complete chloroplast genome of (Lamiaceae), a medicinal plant in southwest of China.中国西南部药用植物紫苏(唇形科)叶绿体全基因组特征分析
Mitochondrial DNA B Resour. 2019 Dec 5;4(2):3969-3970. doi: 10.1080/23802359.2019.1689193.
10
The complete chloroplast genome sequence of the fragrant plant (Lamiaceae).芳香植物(唇形科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2018 Jan 24;3(1):135-136. doi: 10.1080/23802359.2018.1431067.

本文引用的文献

1
GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GetOrganelle:一个快速且通用的工具包,可用于准确从头组装细胞器基因组。
Genome Biol. 2020 Sep 10;21(1):241. doi: 10.1186/s13059-020-02154-5.
2
tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes.tRNAscan-SE在线工具:整合搜索与上下文以分析转运RNA基因
Nucleic Acids Res. 2016 Jul 8;44(W1):W54-7. doi: 10.1093/nar/gkw413. Epub 2016 May 12.
3
Plann: A command-line application for annotating plastome sequences.
Plann:一个用于注释质体基因组序列的命令行应用程序。
Appl Plant Sci. 2015 Aug 10;3(8). doi: 10.3732/apps.1500026. eCollection 2015 Aug.
4
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
5
The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza.药用植物丹参的完整叶绿体基因组序列。
PLoS One. 2013;8(2):e57607. doi: 10.1371/journal.pone.0057607. Epub 2013 Feb 27.
6
Terpenoids from Salvia trijuga.三脉紫菀中的萜类化合物。
J Nat Prod. 2010 Jun 25;73(6):1146-50. doi: 10.1021/np100250w.
7
[Analysis of ITS sequences of some medicinal plants and their related species in Salvia].[丹参属部分药用植物及其近缘物种的ITS序列分析]
Yao Xue Xue Bao. 2007 Dec;42(12):1309-13.
8
OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes.细胞器基因组绘图工具(OGDRAW):一种用于轻松生成高质量质体和线粒体基因组自定义图形图谱的工具。
Curr Genet. 2007 Nov;52(5-6):267-74. doi: 10.1007/s00294-007-0161-y. Epub 2007 Oct 24.