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从线虫线粒体基因组DNA序列推断出的奇异转运RNA

Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.

作者信息

Wolstenholme D R, Macfarlane J L, Okimoto R, Clary D O, Wahleithner J A

出版信息

Proc Natl Acad Sci U S A. 1987 Mar;84(5):1324-8. doi: 10.1073/pnas.84.5.1324.

DOI:10.1073/pnas.84.5.1324
PMID:3469671
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC304420/
Abstract

The complete nucleotide sequence of the mitochondrial DNA (mtDNA) molecule of the parasitic nematode worm Ascaris suum has been determined. This molecule lacks genes for tRNAs of the standard form. Instead, 21 sequences are found that can be folded into structures that resemble tRNAs in which the T psi C arm and variable loop are missing and replaced with a single loop of between 4 and 12 nucleotides. Considerations of various properties of these sequences, including the number, predicted anticodons, conserved nucleotides, direction of transcription, base composition, and relative gene arrangements are consistent with the interpretation that they are genes for a different sort of tRNA. Transfer RNA genes with a similar potential secondary structure are found in mtDNA of the free-living nematode Caenorhabditis elegans, suggesting that this unusual form of tRNA is used by all nematode mitochondria.

摘要

寄生线虫猪蛔虫线粒体DNA(mtDNA)分子的完整核苷酸序列已被确定。该分子缺乏标准形式的tRNA基因。相反,发现了21个序列,它们可以折叠成类似于tRNA的结构,其中TψC臂和可变环缺失,取而代之的是一个由4至12个核苷酸组成的单环。对这些序列的各种特性进行考量,包括数量、预测的反密码子、保守核苷酸、转录方向、碱基组成和相对基因排列,均与它们是不同类型tRNA的基因这一解释相符。在自由生活线虫秀丽隐杆线虫的mtDNA中也发现了具有类似潜在二级结构的tRNA基因,这表明所有线虫线粒体都使用这种不寻常形式的tRNA。

相似文献

1
Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.从线虫线粒体基因组DNA序列推断出的奇异转运RNA
Proc Natl Acad Sci U S A. 1987 Mar;84(5):1324-8. doi: 10.1073/pnas.84.5.1324.
2
A set of tRNAs that lack either the T psi C arm or the dihydrouridine arm: towards a minimal tRNA adaptor.一组缺少TψC臂或二氢尿嘧啶臂的tRNA:迈向最小化tRNA适配体。
EMBO J. 1990 Oct;9(10):3405-11. doi: 10.1002/j.1460-2075.1990.tb07542.x.
3
The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum.两种线虫——秀丽隐杆线虫和猪蛔虫的线粒体基因组。
Genetics. 1992 Mar;130(3):471-98. doi: 10.1093/genetics/130.3.471.
4
Nucleotide correlations that suggest tertiary interactions in the TV-replacement loop-containing mitochondrial tRNAs of the nematodes, Caenorhabditis elegans and Ascaris suum.在秀丽隐杆线虫和猪蛔虫含TV替换环的线粒体tRNA中提示三级相互作用的核苷酸相关性。
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7
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Primary and higher order structures of nematode (Ascaris suum) mitochondrial tRNAs lacking either the T or D stem.缺乏T或D茎的线虫(猪蛔虫)线粒体tRNA的一级和高级结构
J Biol Chem. 1994 Sep 9;269(36):22902-6.
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