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绘制胃癌的基因组离散图谱。

Mapping the genomic diaspora of gastric cancer.

作者信息

Yeoh Khay Guan, Tan Patrick

机构信息

Department of Medicine, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.

Department of Gastroenterology and Hepatology, National University Health System, Singapore, Singapore.

出版信息

Nat Rev Cancer. 2022 Feb;22(2):71-84. doi: 10.1038/s41568-021-00412-7. Epub 2021 Oct 26.

Abstract

Gastric cancer (GC) is a leading contributor to global cancer incidence and mortality. Pioneering genomic studies, focusing largely on primary GCs, revealed driver alterations in genes such as ERBB2, FGFR2, TP53 and ARID1A as well as multiple molecular subtypes. However, clinical efforts targeting these alterations have produced variable results, hampered by complex co-alteration patterns in molecular profiles and intra-patient genomic heterogeneity. In this Review, we highlight foundational and translational advances in dissecting the genomic cartography of GC, including non-coding variants, epigenomic aberrations and transcriptomic alterations, and describe how these alterations interplay with environmental influences, germline factors and the tumour microenvironment. Mapping of these alterations over the GC life cycle in normal gastric tissues, metaplasia, primary carcinoma and distant metastasis will improve our understanding of biological mechanisms driving GC development and promoting cancer hallmarks. On the translational front, integrative genomic approaches are identifying diverse mechanisms of GC therapy resistance and emerging preclinical targets, enabled by technologies such as single-cell sequencing and liquid biopsies. Validating these insights will require specifically designed GC cohorts, converging multi-modal genomic data with longitudinal data on therapeutic challenges and patient outcomes. Genomic findings from these studies will facilitate 'next-generation' clinical initiatives in GC precision oncology and prevention.

摘要

胃癌(GC)是导致全球癌症发病率和死亡率的主要因素。早期的基因组研究主要聚焦于原发性胃癌,揭示了ERBB2、FGFR2、TP53和ARID1A等基因的驱动改变以及多种分子亚型。然而,针对这些改变的临床研究结果各异,分子图谱中复杂的共改变模式以及患者体内的基因组异质性对此造成了阻碍。在本综述中,我们重点介绍了剖析胃癌基因组图谱方面的基础和转化进展,包括非编码变异、表观基因组畸变和转录组改变,并描述了这些改变如何与环境影响、种系因素和肿瘤微环境相互作用。在正常胃组织、化生、原发性癌和远处转移的胃癌生命周期中绘制这些改变图谱,将增进我们对驱动胃癌发展和促进癌症特征的生物学机制的理解。在转化医学方面,整合基因组方法正在识别胃癌治疗耐药的多种机制和新出现的临床前靶点,这得益于单细胞测序和液体活检等技术。验证这些见解需要专门设计的胃癌队列,将多模式基因组数据与关于治疗挑战和患者预后的纵向数据相结合。这些研究的基因组学发现将推动胃癌精准肿瘤学和预防领域的“下一代”临床倡议。

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