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miRNA - 1245a调控网络在肌肉减少症中的潜在作用

Potential Roles of miRNA-1245a Regulatory Networks in Sarcopenia.

作者信息

An Li, Wang Yao

机构信息

Department of Geriatrics, Zhongda Hospital Southeast University,, Nanjing City, People's Republic of China.

Department of Endocrine, Zhongda Hospital Southeast University, Nanjing City, People's Republic of China.

出版信息

Int J Gen Med. 2021 Oct 14;14:6807-6813. doi: 10.2147/IJGM.S334501. eCollection 2021.

Abstract

OBJECTIVE

Sarcopenia is a universal problem in elderly individuals. The molecular regulatory mechanisms in sarcopenia are not well understood. In the present study, we explored a possible molecular mechanism involved in the pathogenesis of sarcopenia.

METHODS

Differentially expressed genes (DEGs) were identified using the Gene Expression Omnibus (GEO) database. Signaling pathways related to these DEGs were identified by gene set enrichment analysis (GSEA). Pearson correlation was calculated for all the pairwise comparisons of gene expression values between coding genes and DEGs. Interactions between the proteins encoded by the DEGs were identified using the STRING database. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) biological pathway analyses were performed to predict the functions of the DEGs.

RESULTS

Three differentially expressed miRNAs and 5 differentially expressed mRNAs were identified in association with DEGs. We found that miRNA-1245a expression in patients with sarcopenia was higher than that in healthy controls. The GSEA showed that many pathways, such as the JAK-STAT signaling pathway and pathways related to glioma, gap junctions, and regulation of the actin cytoskeleton, were enriched in the high-miRNA-1245a-expression group. A total of 127 miRNA-1245a-related mRNAs were identified. The GO and KEGG analyses revealed that miRNA-1245a had a strong effect on a number of fundamental biological processes, such as kinase activity, that are related to the development of sarcopenia.

CONCLUSION

Our analyses indicate that miRNA-1245a may be a potential key molecule in the diagnosis and treatment of sarcopenia, which provides a basis for the research of miRNA in sarcopenia.

摘要

目的

肌肉减少症是老年人普遍存在的问题。目前对肌肉减少症的分子调控机制尚不清楚。在本研究中,我们探讨了肌肉减少症发病机制中可能涉及的分子机制。

方法

利用基因表达综合数据库(GEO)鉴定差异表达基因(DEG)。通过基因集富集分析(GSEA)确定与这些DEG相关的信号通路。对编码基因和DEG之间的基因表达值进行所有成对比较,计算Pearson相关性。利用STRING数据库确定DEG编码蛋白之间的相互作用。进行基因本体(GO)和京都基因与基因组百科全书(KEGG)生物通路分析,以预测DEG的功能。

结果

鉴定出3种差异表达的miRNA和5种差异表达的mRNA与DEG相关。我们发现肌肉减少症患者中miRNA-1245a的表达高于健康对照。GSEA显示,许多通路,如JAK-STAT信号通路以及与胶质瘤、间隙连接和肌动蛋白细胞骨架调节相关的通路,在高miRNA-1245a表达组中富集。共鉴定出127个与miRNA-1245a相关的mRNA。GO和KEGG分析表明,miRNA-1245a对许多与肌肉减少症发展相关的基本生物学过程,如激酶活性,有强烈影响。

结论

我们的分析表明,miRNA-1245a可能是肌肉减少症诊断和治疗中的潜在关键分子,为miRNA在肌肉减少症中的研究提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/65f9/8523505/1a898d4ea9df/IJGM-14-6807-g0001.jpg

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