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The complete chloroplast genome sequence of (Orchidaceae).

作者信息

Xia Keke, Liu Ding-Kun, Wang Jie-Yu

机构信息

BGI-Shenzhen, Shenzhen, China.

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at Colleage of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, China.

出版信息

Mitochondrial DNA B Resour. 2021 Oct 27;6(11):3303-3305. doi: 10.1080/23802359.2021.1994889. eCollection 2021.

DOI:10.1080/23802359.2021.1994889
PMID:34722880
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8555540/
Abstract

In the present study, we reported and characterized the complete chloroplast genome of a moth orchid, , which is endemic to South China. Its plastid genome size is 145,373 bp, consisting of a large single copy (LSC) region (84,996 bp), a small single-copy region (10,668 bp), and two inverted repeats (IRs) regions (24,855 bp). A total of 122 plastid genes were annotated, comprising 76 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The phylogenetic tree further revealed that showed a sister relationship with within subgenus .

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e055/8555540/b5eb0be9a8d3/TMDN_A_1994889_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e055/8555540/b5eb0be9a8d3/TMDN_A_1994889_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e055/8555540/b5eb0be9a8d3/TMDN_A_1994889_F0001_C.jpg

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本文引用的文献

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Mitochondrial DNA B Resour. 2019 Oct 15;4(2):3569-3570. doi: 10.1080/23802359.2019.1674715.
2
Orchid phylogenomics and multiple drivers of their extraordinary diversification.兰花系统发育基因组学及其非凡多样化的多种驱动因素。
Proc Biol Sci. 2015 Sep 7;282(1814). doi: 10.1098/rspb.2015.1553.
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Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.利用全基因组鸟枪法短读长数据对高杂合基因组进行高效的从头组装。
Genome Res. 2014 Aug;24(8):1384-95. doi: 10.1101/gr.170720.113. Epub 2014 Apr 22.
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Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
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Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic：一个集成和可扩展的桌面软件平台，用于组织和分析序列数据。
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jModelTest: phylogenetic model averaging.jModelTest：系统发育模型平均法。
Mol Biol Evol. 2008 Jul;25(7):1253-6. doi: 10.1093/molbev/msn083. Epub 2008 Apr 8.
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The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications.蝴蝶兰（兰科）叶绿体基因组：与禾本科植物进化速率的比较分析及其系统发育意义
Mol Biol Evol. 2006 Feb;23(2):279-91. doi: 10.1093/molbev/msj029. Epub 2005 Oct 5.