Department of Hematopoiesis, Sanquin Research and Landsteiner Laboratory, Amsterdam UMC, University of Amsterdam, 1066CX Amsterdam, The Netherlands.
Oncode Institute, Utrecht, The Netherlands.
RNA. 2022 Feb;28(2):194-209. doi: 10.1261/rna.078754.121. Epub 2021 Nov 3.
Each day, about 10 erythrocytes and platelets are released into the bloodstream. This substantial output from hematopoietic stem cells is tightly regulated by transcriptional and epigenetic factors. Whether and how circular RNAs (circRNAs) contribute to the differentiation and/or identity of hematopoietic cells is to date not known. We recently reported that erythrocytes and platelets contain the highest levels and numbers of circRNAs among hematopoietic cells. Here, we provide the first detailed analysis of circRNA expression during erythroid and megakaryoid differentiation. CircRNA expression not only significantly increased upon enucleation, but also had limited overlap between progenitor cells and mature cells, suggesting that circRNA expression stems from regulated processes rather than resulting from mere accumulation. To study circRNA function in hematopoiesis, we first compared the expression levels of circRNAs with the translation efficiency of their mRNA counterpart. We found that only one out of 2531 (0.04%) circRNAs associated with mRNA-translation regulation. Furthermore, irrespective of thousands of identified putative open reading frames, deep ribosome-footprinting sequencing, and mass spectrometry analysis provided little evidence for translation of endogenously expressed circRNAs. In conclusion, circRNAs alter their expression profile during terminal hematopoietic differentiation, yet their contribution to regulate cellular processes remains enigmatic.
每天约有 10 个红细胞和血小板释放到血液中。造血干细胞的这种大量输出受到转录和表观遗传因素的严格调控。环状 RNA(circRNA)是否以及如何有助于造血细胞的分化和/或身份,目前尚不清楚。我们最近报道称,红细胞和血小板中含有最高水平和数量的 circRNA。在这里,我们首次对红细胞和巨核细胞分化过程中的 circRNA 表达进行了详细分析。circRNA 的表达不仅在去核后显著增加,而且在祖细胞和成熟细胞之间的重叠有限,这表明 circRNA 的表达源于受调控的过程,而不是仅仅由于积累。为了研究 circRNA 在造血中的功能,我们首先比较了 circRNA 的表达水平与其 mRNA 对应物的翻译效率。我们发现,在 2531 个(0.04%)circRNA 中,只有一个与 mRNA 翻译调控有关。此外,无论识别出数千个潜在的开放阅读框,核糖体足迹深度测序和质谱分析都几乎没有提供内源性表达的 circRNA 翻译的证据。总之,circRNA 在终末造血分化过程中改变其表达谱,但它们对调节细胞过程的贡献仍然是一个谜。