Wen Xiaomin, Wang Wenxiang, Zheng Mei, Song Bei
Department of Pediatrics, Xiangyang No. 1 People's Hospital, Hubei University of Medicine, Xiangyang, China.
Transl Pediatr. 2021 Sep;10(9):2298-2306. doi: 10.21037/tp-21-348.
The molecular mechanism of in the treatment of children with nephrotic syndrome (NS) is unclear. This study aimed to use network pharmacology to explore this potential mechanism.
The Traditional Chinese Medicine Systems Pharmacology (TCMSP) database was used to identify the main active ingredients of . The PharmMapper, Online Mendelian Inheritance in Man (OMIM), and GeneCards databases were then used to identify the active ingredients of . The String database and Cytoscape software were used to construct the protein-protein network. The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were performed using DAVID Database.
In the TCMSP Database, a total of 20 chemical constituents of were screened. After removing the duplicates and false positive genes, 394 targets of these active ingredients were obtained from PharmMapper. By comparing the NS-related genes in the GeneCards and OMIM Databases, a total of 39 potential NS-related targets were ultimately identified. The protein-protein-interaction network included 39 nodes and 366 edges. The top 5 proteins were albumin (ALB), serine/threonine kinase (AKT1), epidermal growth factor receptor (EGFR), mitogen-activated protein kinase (MAPK), and matrix metallopeptidase 9 (MMP9). The GO analysis showed that the target genes were mainly involved in biological processes (e.g., signal transduction, the positive regulation of cell proliferation, and the positive regulation of migration). The cellular components included a plasma membrane, extracellular exosome, and extracellular space. The molecular functions included protein binding, zinc-ion binding, protein tyrosine kinase activity, and enzyme binding. The KEGG analysis showed that the treatment of NS by mainly involved pathways in cancer, proteoglycans in cancer, the phosphatidylinositol 3-kinase and protein kinase B (PI3K-Akt) signaling pathway, the rennin-angiotensin-system (Ras) signaling pathways, and Forkhead box protein O1 (FoxO) signaling pathways.
In the present study, the network pharmacology method was used to explore the potential targets and pathways of in the treatment of NS. We also provided future research directions for the treatment of NS with a complex pathogenesis.
[药物名称]治疗儿童肾病综合征(NS)的分子机制尚不清楚。本研究旨在运用网络药理学探索其潜在机制。
利用中药系统药理学(TCMSP)数据库鉴定[药物名称]的主要活性成分。随后使用PharmMapper、在线人类孟德尔遗传(OMIM)和GeneCards数据库鉴定[药物名称]的活性成分。利用String数据库和Cytoscape软件构建蛋白质-蛋白质网络。使用DAVID数据库进行基因本体(GO)和京都基因与基因组百科全书(KEGG)通路分析。
在TCMSP数据库中,共筛选出[药物名称]的[具体数量]种化学成分。去除重复和假阳性基因后,从PharmMapper获得这些活性成分的394个靶点。通过比较GeneCards和OMIM数据库中的NS相关基因,最终共鉴定出39个潜在的NS相关靶点。蛋白质-蛋白质相互作用网络包括39个节点和366条边。排名前5的蛋白质分别是白蛋白(ALB)、丝氨酸/苏氨酸激酶(AKT1)、表皮生长因子受体(EGFR)、丝裂原活化蛋白激酶(MAPK)和基质金属蛋白酶9(MMP9)。GO分析表明,靶基因主要参与生物学过程(如信号转导、细胞增殖的正调控和迁移的正调控)。细胞成分包括质膜、细胞外囊泡和细胞外空间。分子功能包括蛋白质结合、锌离子结合、蛋白质酪氨酸激酶活性和酶结合。KEGG分析表明,[药物名称]治疗NS主要涉及癌症、癌症中的蛋白聚糖、磷脂酰肌醇3-激酶和蛋白激酶B(PI3K-Akt)信号通路、肾素-血管紧张素系统(Ras)信号通路和叉头框蛋白O1(FoxO)信号通路。
在本研究中,运用网络药理学方法探索了[药物名称]治疗NS的潜在靶点和通路。我们还为治疗发病机制复杂的NS提供了未来的研究方向。