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基于网络药理学的固原汤治疗频繁复发肾病综合征的活性化合物和潜在靶点的预测和验证。

Forecast and verification of the active compounds and latent targets of Guyuan decoction in treating frequently relapsing nephrotic syndrome based on network pharmacology.

机构信息

Traditional Chinese Medicine Pediatrics Department, Second Outpatient Department, Tongde Hospital of Zhejiang Province, Hangzhou, China.

Clinical School of Medicine, Hangzhou Medical College, Hangzhou, China.

出版信息

Ren Fail. 2023 Dec;45(1):2184654. doi: 10.1080/0886022X.2023.2184654.

Abstract

BACKGROUND

Our study majorly utilizes network pharmacology combined with molecular docking to explore the latent active components and associated pivotal targets of Guyuan Decoction (GYD) in the treatment of frequently relapsing nephrotic syndrome (FRNS).

METHODS

All active components and latent targets of GYD were retrieved from TCMSP database. The target genes for FRNS in our research were obtained from the GeneCards database. The drug-compounds-disease-targets (D-C-D-T) network was established using Cytoscape 3.7.1. STRING database was applied to observe the protein interaction. Pathway enrichment analyses (GO and KEGG) were conducted in R software. Moreover, molecular docking was employed to further validate the binding activity. MPC-5 cells were treated with adriamycin to mimic FRNS and to determine the effects of luteolin on modeled cells.

RESULTS

A total of 181 active components and 186 target genes of GYD were identified. Meanwhile, 518 targets related to FRNS were also revealed. Based on the intersection using a Venn diagram, 51 common latent targets were recognized to be associated with active ingredients and FRNS. Additionally, we identified the biological processes and signaling pathways involved in the action of these targets. Molecular docking analyses illustrated that AKT1 and CASP3 interacted with luteolin, wogonin, and kaempferol, respectively. Moreover, luteolin treatment enhanced the viability but inhibited the apoptosis of adriamycin-treated MPC-5 cells regulating AKT1 and CASP3.

CONCLUSION

Our study forecasts the active compounds, latent targets, and molecular mechanisms of GYD in FRNS, which helps us to understand the action mechanism of GYD in FRNS comprehensive treatment.

摘要

背景

本研究主要运用网络药理学结合分子对接技术,探讨归元方治疗频复发肾病综合征(FRNS)的潜在活性成分及相关关键靶点。

方法

从 TCMSP 数据库中检索归元方的所有活性成分和潜在靶点。从 GeneCards 数据库中获取本研究中 FRNS 的靶基因。使用 Cytoscape 3.7.1 构建药物-化合物-疾病-靶点(D-C-D-T)网络。STRING 数据库用于观察蛋白质相互作用。在 R 软件中进行通路富集分析(GO 和 KEGG)。此外,还进行了分子对接实验以进一步验证结合活性。用阿霉素处理 MPC-5 细胞模拟 FRNS,并测定木犀草素对模型细胞的影响。

结果

共鉴定出 181 种归元方的活性成分和 186 个靶基因,同时还揭示了与 FRNS 相关的 518 个靶基因。通过 Venn 图的交集,共识别出 51 个与活性成分和 FRNS 相关的共同潜在靶点。此外,我们还鉴定了这些靶点参与的生物学过程和信号通路。分子对接分析表明,AKT1 和 CASP3 分别与木犀草素、白杨素和山奈酚相互作用。此外,木犀草素处理可增强阿霉素处理的 MPC-5 细胞的活力,但抑制其凋亡,调节 AKT1 和 CASP3。

结论

本研究预测了归元方在 FRNS 中的活性成分、潜在靶点和分子机制,有助于我们理解归元方在 FRNS 综合治疗中的作用机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/66d6/9987733/21f7a189e07b/IRNF_A_2184654_F0001_C.jpg

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