Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia.
Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia.
Syst Appl Microbiol. 2021 Nov;44(6):126276. doi: 10.1016/j.syapm.2021.126276. Epub 2021 Oct 25.
Planctomycetes of the family Gemmataceae are strictly aerobic chemo-organotrophs that display a number of hydrolytic capabilities. A member of this family, Telmatocola sphagniphila SP2, is the first described planctomycete with experimentally proven ability for growth on cellulose. In this study, the complete genome sequence of strain SP2 was obtained and the genome-encoded determinants of its cellulolytic potential were analyzed. The T. sphagniphila SP2 genome was 6.59 Mb in size and contained over 5200 potential protein-coding genes. The search for enzymes that could be potentially involved in cellulose degradation identified a putative cellulase that contained a domain from the GH44 family of glycoside hydrolases. Homologous enzymes were also revealed in the genomes of two other Gemmataceae planctomycetes, Zavarzinella formosa A10 and Tuwongella immobilis MBLW1. The gene encoding this predicted cellulase in strain SP2 was expressed in E. coli and the hydrolytic activity of the recombinant enzyme was confirmed in tests with carboxymethyl cellulose but not with crystalline cellulose, xylan, mannan or laminarin. This is the first experimentally characterized cellulolytic enzyme from planctomycetes.
Gemmataceae 家族的盘杆菌是严格需氧的化能有机营养型微生物,具有多种水解能力。该家族的一个成员,即泥炭鞘氨醇单胞菌 SP2,是第一个被描述的具有实验证明的纤维素生长能力的盘杆菌。在本研究中,获得了菌株 SP2 的完整基因组序列,并分析了其纤维素分解潜能的基因组编码决定因素。T. sphagniphila SP2 基因组大小为 6.59 Mb,包含超过 5200 个潜在的蛋白质编码基因。对可能参与纤维素降解的酶的搜索鉴定了一种假定的纤维素酶,该酶含有糖苷水解酶 GH44 家族的一个结构域。在另外两个 Gemmataceae 盘杆菌,即变形美丽菌 A10 和固定鞘氨醇单胞菌 MBLW1 的基因组中也发现了同源酶。编码该预测纤维素酶的基因在大肠杆菌中表达,并在羧甲基纤维素的测试中证实了重组酶的水解活性,但在结晶纤维素、木聚糖、甘露聚糖或昆布多糖的测试中没有活性。这是第一个从盘杆菌中经过实验鉴定的纤维素酶。