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红菌柄球菌属,新属,新种,一种来自泥炭藓泥炭沼泽的类芽单胞菌属浮霉菌,并提出芽单胞菌科,新科

Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov.

作者信息

Kulichevskaya Irina S, Ivanova Anastasia A, Baulina Olga I, Rijpstra W Irene C, Sinninghe Damsté Jaap S, Dedysh Svetlana N

机构信息

Winogradsky Institute of Microbiology, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia.

Department of Bioengineering, Faculty of Biology, M.V. Lomonosov Moscow State University, GSP-1, Moscow 119234, Russia.

出版信息

Int J Syst Evol Microbiol. 2017 Feb;67(2):218-224. doi: 10.1099/ijsem.0.001598. Epub 2017 Mar 16.

Abstract

An aerobic, budding, dark pink to red-pigmented bacterium was isolated from an acidic boreal Sphagnum peat bog and designated strain SP5T. Cells of this strain were non-motile spheres that were uniformly covered with crateriform pits and fimbria, and tended to form aggregates during growth in liquid media. Strain SP5T was capable of growth between pH 4.0 and pH 6.8 (optimum at pH 5.5-6.0) and at temperatures between 10 and 30 °C (optimum at 20-25 °C). The preferred growth substrates were sugars and some heteropolysaccharides. The major fatty acids were C20 : 1ω9c, C16 : 1ω9c and C16 : 0, and the major polar lipid was trimethylornithine. Cells contained also significant amounts of bound (ω-1)OH-C30 : 1 fatty acid. The quinone was menaquinone-6, and the G+C content of the DNA was 60.7 mol%. Strain SP5T was a member of the order Planctomycetales and belonged to the phylogenetic lineage defined by the genus Gemmata. It displayed 88 and 89 % 16S rRNA gene sequence similarity to Gemmata obscuriglobusUQM 2246T and 'Gemmata massiliana' IIL30, 89 % to Zavarzinella formosa A10T and 86 % to Telmatocola sphagniphila SP2T. However, strain SP5T differed from members of these genera by cell morphology, substrate utilization pattern and fatty acid composition. Based on these data, the novel isolate should be considered as representing a novel species of a new genus of planctomycetes, for which the name Fimbriiglobus ruber gen. nov., sp. nov, is proposed. The type strain is SP5T (=LMG 29572T=VKM B-3045T). We also suggest the establishment of a novel family, Gemmataceaefam. nov., which includes the phylogenetically related genera Gemmata, Zavarzinella, Telmatocola and Fimbriiglobus.

摘要

从酸性北方泥炭藓泥炭沼泽中分离出一株需氧、芽殖、呈暗粉色至红色的细菌,命名为菌株SP5T。该菌株的细胞为不运动的球形,表面均匀覆盖着火山口状凹坑和菌毛,在液体培养基中生长时倾向于形成聚集体。菌株SP5T能够在pH值4.0至6.8之间生长(最适pH值为5.5 - 6.0),温度在10至30°C之间(最适温度为20 - 25°C)。其偏好的生长底物是糖类和一些杂多糖。主要脂肪酸为C20 : 1ω9c、C16 : 1ω9c和C16 : 0,主要极性脂为三甲基鸟氨酸。细胞中还含有大量结合态的(ω-1)OH-C30 : 1脂肪酸。醌类为甲基萘醌-6,DNA的G+C含量为60.7 mol%。菌株SP5T属于浮霉菌目,属于由Gemmata属定义的系统发育谱系。它与Gemmata obscuriglobus UQM 2246T和“Gemmata massiliana”IIL30的16S rRNA基因序列相似性分别为88%和89%,与Zavarzinella formosa A10T的相似性为89%,与Telmatocola sphagniphila SP2T的相似性为86%。然而,菌株SP5T在细胞形态、底物利用模式和脂肪酸组成方面与这些属的成员不同。基于这些数据,该新分离株应被视为代表浮霉菌纲一个新属的一个新物种,为此提出新属名Fimbriiglobus ruber gen. nov., sp. nov。模式菌株为SP5T(=LMG 29572T=VKM B-3045T)。我们还建议建立一个新科,即Gemmataceae fam. nov.,其中包括系统发育相关的Gemmata属、Zavarzinella属、Telmatocola属和Fimbriiglobus属。

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