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耦合线性体扩散与动态活跃膜或细胞的模式形成系统。

Pattern forming systems coupling linear bulk diffusion to dynamically active membranes or cells.

机构信息

Dept. of Mathematics, Univ. of British Columbia, Vancouver, British Columbia, Canada V6T 1Z2.

出版信息

Philos Trans A Math Phys Eng Sci. 2021 Dec 27;379(2213):20200276. doi: 10.1098/rsta.2020.0276. Epub 2021 Nov 8.

DOI:10.1098/rsta.2020.0276
PMID:34743601
Abstract

Some analytical and numerical results are presented for pattern formation properties associated with novel types of reaction-diffusion (RD) systems that involve the coupling of bulk diffusion in the interior of a multi-dimensional spatial domain to nonlinear processes that occur either on the domain boundary or within localized compartments that are confined within the domain. The class of bulk-membrane system considered herein is derived from an asymptotic analysis in the limit of small thickness of a thin domain that surrounds the bulk medium. When the bulk domain is a two-dimensional disk, a weakly nonlinear analysis is used to characterize Turing and Hopf bifurcations that can arise from the linearization around a radially symmetric, but spatially non-uniform, steady-state of the bulk-membrane system. In a singularly perturbed limit, the existence and linear stability of localized membrane-bound spike patterns is analysed for a Gierer-Meinhardt activator-inhibitor model that includes bulk coupling. Finally, the emergence of collective intracellular oscillations is studied for a class of PDE-ODE bulk-cell model in a bounded two-dimensional domain that contains spatially localized, but dynamically active, circular cells that are coupled through a linear bulk diffusion field. Applications of such coupled bulk-membrane or bulk-cell systems to some biological systems are outlined, and some open problems in this area are discussed. This article is part of the theme issue 'Recent progress and open frontiers in Turing's theory of morphogenesis'.

摘要

本文给出了一些与新型反应扩散(RD)系统相关的模式形成特性的分析和数值结果,这些系统涉及将内部的体扩散与发生在域边界或局部受限隔室内的非线性过程耦合。所考虑的体膜系统类是从围绕体介质的薄域的小厚度极限下的渐近分析中导出的。当体域为二维圆盘时,采用弱非线性分析来描述可能由体膜系统的径向对称但空间不均匀的稳态线性化引起的 Turing 和 Hopf 分岔。在奇异摄动极限下,对于包含体耦合的 Gierer-Meinhardt 激活-抑制模型,分析了局域膜结合尖峰模式的存在性和线性稳定性。最后,研究了在含有空间局部但动态活跃的圆形细胞的有界二维域中的一类 PDE-ODE 体-细胞模型中集体细胞内振荡的出现,这些细胞通过线性体扩散场耦合。概述了这种耦合体膜或体细胞系统在一些生物系统中的应用,并讨论了该领域的一些开放性问题。本文是主题为“图灵形态发生理论的最新进展和前沿问题”的一部分。

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Philos Trans A Math Phys Eng Sci. 2023 Dec 25;381(2263):20220367. doi: 10.1098/rsta.2022.0367. Epub 2023 Nov 6.
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Forced and spontaneous symmetry breaking in cell polarization.细胞极化中的强制和自发对称性破缺。
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Modern perspectives on near-equilibrium analysis of Turing systems.现代视角下的图灵系统近平衡分析
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