Rathnayaka Suresh C, Islam Shahidul M, DiMucci Ida M, MacMillan Samantha N, Lancaster Kyle M, Mankad Neal P
Department of Chemistry, University of Illinois at Chicago 845 W. Taylor St. Chicago IL 60607 USA
Department of Chemistry & Chemical Biology, Cornell University, Baker Laboratory Ithaca NY 14853 USA
Chem Sci. 2020 Feb 17;11(13):3441-3447. doi: 10.1039/c9sc06251c. eCollection 2020 Apr 7.
Nitrous oxide (NO) contributes significantly to ozone layer depletion and is a potent greenhouse agent, motivating interest in the chemical details of biological NO fixation by nitrous oxide reductase (NOR) during bacterial denitrification. In this study, we report a combined experimental/computational study of a synthetic [4Cu:1S] cluster supported by N-donor ligands that can be considered the closest structural and functional mimic of the Cu catalytic site in NOR reported to date. Quantitative N measurements during synthetic NO reduction were used to determine reaction stoichiometry, which in turn was used as the basis for density functional theory (DFT) modeling of hypothetical reaction intermediates. The mechanism for NO reduction emerging from this computational modeling involves cooperative activation of NO across a Cu/S cluster edge. Direct interaction of the μ-S ligand with the NO substrate during coordination and N-O bond cleavage represents an unconventional mechanistic paradigm to be considered for the chemistry of Cu and related metal-sulfur clusters. Consistent with hypothetical participation of the μ-S unit in two-electron reduction of NO, Cu K-edge and S K-edge X-ray absorption spectroscopy (XAS) reveal a high degree of participation by the μ-S in redox changes, with approximately 21% S 3p contribution to the redox-active molecular orbital in the highly covalent [4Cu:1S] core, compared to approximately 14% Cu 3d contribution per copper. The XAS data included in this study represent the first spectroscopic interrogation of multiple redox levels of a [4Cu:1S] cluster and show high fidelity to the biological Cu site.
一氧化二氮(N₂O)对臭氧层损耗有重大影响,并且是一种强效温室气体,这激发了人们对细菌反硝化过程中一氧化二氮还原酶(NOR)固定生物N₂O的化学细节的兴趣。在本研究中,我们报告了一项关于由氮供体配体支持的合成[4Cu:1S]簇的实验与计算相结合的研究,该簇可被视为迄今为止报道的NOR中铜催化位点最接近的结构和功能模拟物。在合成N₂O还原过程中的定量N测量用于确定反应化学计量,这反过来又被用作假设反应中间体的密度泛函理论(DFT)建模的基础。从该计算建模中得出的N₂O还原机制涉及通过Cu/S簇边缘对N₂O的协同活化。在配位和N - O键断裂过程中,μ - S配体与N₂O底物的直接相互作用代表了一种非常规的机制范式,可用于考虑铜和相关金属 - 硫簇的化学性质。与μ - S单元在N₂O两电子还原中的假设参与一致,Cu K边和S K边X射线吸收光谱(XAS)揭示了μ - S在氧化还原变化中的高度参与,在高度共价的[4Cu:1S]核心中,约21%的S 3p对氧化还原活性分子轨道有贡献,而每个铜的Cu 3d贡献约为14%。本研究中包含的XAS数据代表了对[4Cu:1S]簇多个氧化还原水平的首次光谱研究,并显示出与生物铜位点的高度保真度。