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来自利比亚的四种未描述新型产油菌株的分子特征和遗传多样性。

Molecular characterization and genetic diversity of four undescribed novel oleaginous strains from Libya.

机构信息

Microbiology and Post Graduation Center, Management and Science University, Shah Alam, Selangor, 40100, Malaysia.

出版信息

F1000Res. 2021 Sep 7;10:895. doi: 10.12688/f1000research.70644.1. eCollection 2021.

Abstract

A large number of undiscovered fungal species still exist on earth, which can be useful for bioprospecting, particularly for single cell oil (SCO) production. is one of the significant genera in this field and contains about hundred species. Moreover, is the main single cell oil producer at commercial scale under this genus. Soil samples from four unique locations of North-East Libya were collected for the isolation of oleaginous strains by a serial dilution method. Morphological identification was carried out using light microscopy (Olympus, Japan) and genetic diversity of the isolated strains was assessed using conserved internal transcribed spacer (ITS) gene sequences available on the NCBI GenBank database for the confirmation of novelty. The nucleotide sequences reported in this study have been deposited at GenBank (accession no. MZ298831:MZ298835). The MultAlin program was used to align the sequences of closely related strains. The DNA sequences were analyzed for phylogenetic relationships by molecular evolutionary genetic analysis using MEGA X software consisting of Clustal_X v.2.1 for multiple sequence alignment. The neighbour-joining tree was constructed using the Kimura 2-parameter substitution model. The present research study confirms four oleaginous fungal isolates from Libyan soil. These isolates (barcoded as MSU-101, MSU-201, MSU-401 and MSU-501) were discovered and reported for the first time from diverse soil samples of district Aljabal Al-Akhdar in North-East Libya and fall in the class: ; order: . Four oleaginous fungal isolates barcoded as MSU-101, MSU-201, MSU-401 and MSU-501 were identified and confirmed by morphological and molecular analysis. These fungal isolates showed highest similarity with species and can be potentialistic single cell oil producers. Thus, the present research study provides insight to the unseen fungal diversity and contributes to more comprehensive reference collections worldwide.

摘要

地球上仍存在大量未被发现的真菌物种,这些物种可用于生物勘探,特别是用于单细胞油(SCO)的生产。 是该领域中重要的属之一,包含约 100 个种。此外, 是该属中在商业规模下生产单细胞油的主要菌株。 从利比亚东北部四个独特地点采集土壤样本,通过连续稀释法分离产油 菌株。使用光学显微镜(日本奥林巴斯)进行形态学鉴定,并使用保存在 NCBI GenBank 数据库中的保守内部转录间隔区(ITS)基因序列评估分离菌株的遗传多样性,以确认新颖性。本研究中报告的核苷酸序列已保存在 GenBank(登录号:MZ298831:MZ298835)。使用 MultAlin 程序对齐密切相关菌株的序列。使用 MEGA X 软件对 DNA 序列进行分析,该软件由 Clustal_X v.2.1 进行多序列比对,使用 Kimura 2-参数替换模型进行分子进化遗传分析,构建系统发育关系。 本研究从利比亚土壤中确认了四种产油真菌分离株。这些分离株(编号为 MSU-101、MSU-201、MSU-401 和 MSU-501)是首次从利比亚东北部的 Aljabal Al-Akhdar 地区的不同土壤样本中发现和报道的,属于: ;目: 。通过形态学和分子分析鉴定和确认了编号为 MSU-101、MSU-201、MSU-401 和 MSU-501 的四种产油真菌分离株。这些真菌分离株与 种的相似度最高,可能是潜在的单细胞油生产者。因此,本研究为未被发现的真菌多样性提供了深入的了解,并为全球更全面的 参考收藏做出了贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d6b0/8564746/2e59add4d0f1/f1000research-10-74246-g0000.jpg

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