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用于预测食管鳞状细胞癌预后的铁死亡相关基因特征及列线图的开发与验证

Development and Validation of a Ferroptosis-Related Gene Signature and Nomogram for Predicting the Prognosis of Esophageal Squamous Cell Carcinoma.

作者信息

Ye Jiecheng, Wu Yining, Cai Heyuan, Sun Li, Deng Wanying, Liang Ruikun, Han Anjia

机构信息

Department of Pathology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, China.

Department of Ophthalmology, Guangdong Women and Children Hospital, Guangzhou, China.

出版信息

Front Genet. 2021 Oct 26;12:697524. doi: 10.3389/fgene.2021.697524. eCollection 2021.

DOI:10.3389/fgene.2021.697524
PMID:34764976
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8576261/
Abstract

Esophageal squamous cell carcinoma (ESCC) is a common malignant tumor with high mortality and poor prognosis. Ferroptosis is a newly discovered form of cell death induced by iron-catalyzed excessive peroxidation of polyunsaturated fatty acids (PUFAs). However, the prognostic value of ferroptosis-related genes (FRGs) for ESCC remains unclear. Based on the ESCC dataset from the Gene Expression Omnibus (GEO) database, we identified 39 prognostic FRGs through univariate Cox regression analysis. After LASSO regression and multivariate Cox regression analyses, a multigene signature based on 10 prognostic FRGs was constructed and successfully divided ESCC patients into two risk groups. Patients in the low-risk group showed a significantly better prognosis than patients in the high-risk group. In addition, we combined the risk score with clinical predictors to construct a nomogram for ESCC. The predictive ability of the nomogram was further verified by ROC curves and calibration plots in both the training and validation sets. The predictive power of the nomogram was demonstrated to be better than that of either the risk score or clinical variable alone. Furthermore, functional analysis revealed that the 10-FRG signature was mainly associated with ferroptosis, differentiation and immune response. Connectivity map analysis identified potential compounds capable of targeting FRGs in ESCC. Finally, we demonstrated the prognostic value of SRC gene in ESCC using the clinical samples and found that SRC inhibition sensitized ESCC cells to ferroptosis inducers by experiments. In conclusion, we identified and verified a 10-FRG prognostic signature and a nomogram, which provide individualized prognosis prediction and provide insight into potential therapeutic targets for ESCC.

摘要

食管鳞状细胞癌(ESCC)是一种常见的恶性肿瘤,死亡率高且预后较差。铁死亡是一种新发现的细胞死亡形式,由铁催化的多不饱和脂肪酸(PUFA)过度过氧化诱导。然而,铁死亡相关基因(FRG)对ESCC的预后价值仍不清楚。基于来自基因表达综合数据库(GEO)的ESCC数据集,我们通过单变量Cox回归分析确定了39个预后FRG。经过LASSO回归和多变量Cox回归分析,构建了基于10个预后FRG的多基因特征,并成功将ESCC患者分为两个风险组。低风险组患者的预后明显优于高风险组患者。此外,我们将风险评分与临床预测因素相结合,构建了ESCC的列线图。通过训练集和验证集的ROC曲线和校准图进一步验证了列线图的预测能力。结果表明,列线图的预测能力优于单独的风险评分或临床变量。此外,功能分析显示,10-FRG特征主要与铁死亡、分化和免疫反应相关。连接图谱分析确定了能够靶向ESCC中FRG的潜在化合物。最后,我们使用临床样本证明了SRC基因在ESCC中的预后价值,并通过实验发现SRC抑制使ESCC细胞对铁死亡诱导剂敏感。总之,我们鉴定并验证了一个10-FRG预后特征和一个列线图,它们为ESCC提供了个性化的预后预测,并为潜在的治疗靶点提供了见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ead0/8576261/beea9a4827cf/fgene-12-697524-g011.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ead0/8576261/9b835380b722/fgene-12-697524-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ead0/8576261/20c746708f13/fgene-12-697524-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ead0/8576261/ecda8fb8f4a6/fgene-12-697524-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ead0/8576261/48ad4e595714/fgene-12-697524-g007.jpg
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Ferroptosis-related gene signature as a prognostic marker for lower-grade gliomas.铁死亡相关基因特征作为低级别胶质瘤的预后标志物。
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miR-18a promotes glioblastoma development by down-regulating ALOXE3-mediated ferroptotic and anti-migration activities.微小RNA-18a通过下调ALOXE3介导的铁死亡和抗迁移活性促进胶质母细胞瘤的发展。
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Development and Validation of a Combined Ferroptosis and Immune Prognostic Classifier for Hepatocellular Carcinoma.肝细胞癌铁死亡与免疫联合预后分类器的开发与验证
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