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糖酵解相关的LINC02432/Hsa-miR-98-5p/HK2轴抑制铁死亡,并预测胰腺腺癌中的免疫浸润、肿瘤突变负荷和药物敏感性。

Glycolysis-Related LINC02432/Hsa-miR-98-5p/HK2 Axis Inhibits Ferroptosis and Predicts Immune Infiltration, Tumor Mutation Burden, and Drug Sensitivity in Pancreatic Adenocarcinoma.

作者信息

Tan Peng, Li Mo, Liu Zhuoran, Li Tongxi, Zhao Lingyu, Fu Wenguang

机构信息

Department of Cell Biology and Genetics / Institute of Genetics and Developmental Biology, School of Basic Medical Sciences, Xi'an Jiaotong University Health Science Center, Xi'an, China.

Academician (Expert) Workstation of Sichuan Province, The Affiliated Hospital of Southwest Medical University, Luzhou, China.

出版信息

Front Pharmacol. 2022 Jun 20;13:937413. doi: 10.3389/fphar.2022.937413. eCollection 2022.

Abstract

Pancreatic adenocarcinoma (PAAD) is a malignant cancer with high incidence and mortality. Glycometabolic rearrangements (aerobic glycolysis) is a hallmark of PAAD and contributes to tumorigenesis and progression through numerous mechanisms. This study aimed to identify a novel glycolysis-related lncRNA-miRNA-mRNA ceRNA signature in PAAD and explore its potential molecular function. We first calculated the glycolysis score for each PAAD patient by the ssGSEA algorithm and found that patients with higher hallmark glycolysis scores had poorer prognosis. Subsequently, we obtained a novel glycolysis-related LINC02432/hsa-miR-98-5p/HK2 axis from the TCGA and GEO databases using comprehensive bioinformatics analysis and developed a nomogram to predict overall survival. Furthermore, functional characterization analysis revealed that LINC02432/hsa-miR-98-5p/HK2 axis risk score was negatively correlated with ferroptosis. The tumor immune infiltration analysis suggested positive correlations between ceRNA risk score and infiltrated M0 macrophage levels in PAAD. Correlation analysis found that ceRNA risk scores were positively correlated with four chemokines (CXCL3, CXCL5, CXCL8 and CCL20) and one immune checkpoint gene (SIGLEC15). Meanwhile, tumor mutation burden (TMB), an indicator for predicting response to immunotherapy, was positively correlated with ceRNA risk score. Finally, the drug sensitivity analysis showed that the high-risk score patients might be more sensitive to EGFR, MEK and ERK inhibitors than low-risk score patients. In conclusion, our study suggested that LINC02432/hsa-miR-98-5p/HK2 axis may serve as a novel diagnostic, prognostic, and therapeutic target in PAAD treatment.

摘要

胰腺腺癌(PAAD)是一种发病率和死亡率都很高的恶性肿瘤。糖代谢重排(有氧糖酵解)是PAAD的一个标志,通过多种机制促进肿瘤发生和进展。本研究旨在识别PAAD中一种新的糖酵解相关lncRNA-miRNA-mRNA ceRNA特征,并探索其潜在的分子功能。我们首先通过ssGSEA算法计算每个PAAD患者的糖酵解评分,发现具有较高标志性糖酵解评分的患者预后较差。随后,我们使用综合生物信息学分析从TCGA和GEO数据库中获得了一个新的糖酵解相关LINC02432/hsa-miR-98-5p/HK2轴,并开发了一个列线图来预测总生存期。此外,功能特征分析显示LINC02432/hsa-miR-98-5p/HK2轴风险评分与铁死亡呈负相关。肿瘤免疫浸润分析表明,ceRNA风险评分与PAAD中浸润的M0巨噬细胞水平呈正相关。相关性分析发现,ceRNA风险评分与四种趋化因子(CXCL3、CXCL5、CXCL8和CCL20)和一个免疫检查点基因(SIGLEC15)呈正相关。同时,作为预测免疫治疗反应指标的肿瘤突变负担(TMB)与ceRNA风险评分呈正相关。最后,药物敏感性分析表明,高风险评分患者可能比低风险评分患者对EGFR、MEK和ERK抑制剂更敏感。总之,我们的研究表明,LINC02432/hsa-miR-98-5p/HK2轴可能作为PAAD治疗中的一种新的诊断、预后和治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/453b/9251347/dfc4a8f2fcf3/fphar-13-937413-g001.jpg

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