Suppr超能文献

染色体水平的基因组组装揭示了……的Toll和IMD信号通路中显著的基因扩增。

Chromosome-Level Genome Assembly Reveals Significant Gene Expansion in the Toll and IMD Signaling Pathways of .

作者信息

Zhou Jielong, Wu Peifu, Xiong Zhongping, Liu Naiyong, Zhao Ning, Ji Mei, Qiu Yu, Yang Bin

机构信息

Key Laboratory of Forest Disaster Warning and Control of Yunnan Province, Southwest Forestry University, Kunming, China.

College of Life Science, Southwest Forestry University, Kunming, China.

出版信息

Front Genet. 2021 Oct 29;12:728418. doi: 10.3389/fgene.2021.728418. eCollection 2021.

Abstract

A high-quality genome is of significant value when seeking to control forest pests such as , a destructive member of the order Lepidoptera that is widespread in China. Herein, a high quality, chromosome-level reference genome for based on Nanopore, Pacbio HiFi sequencing and the Hi-C capture system is presented. Overall, a final genome assembly of 705.51 Mb with contig and scaffold N50 values of 20.89 and 24.73 Mb, respectively, was obtained. Of these contigs, 95.89% had unique locations on 29 chromosomes. analysis revealed that the genome contained 15,323 protein-coding genes and 63.44% repetitive sequences. Phylogenetic analyses indicated that may diverged from the common ancestor of , , , , and approximately 122.05 million years ago. Many gene families were expanded in the genome, particularly those of the Toll and IMD signaling pathway, which included 10 genes in , 19 genes in , and 11 genes in . The findings from this study will help to elucidate the mechanisms involved in protection of against foreign substances and pathogens, and may highlight a potential channel to control this pest.

摘要

当试图控制森林害虫如 时,高质量的基因组具有重要价值, 是鳞翅目一种具有破坏性的成员,在中国广泛分布。在此,基于纳米孔、Pacbio HiFi测序和Hi-C捕获系统,展示了一个高质量的、染色体水平的 的参考基因组。总体而言,获得了一个最终基因组组装体,大小为705.51 Mb,重叠群和支架N50值分别为20.89 Mb和24.73 Mb。在这些重叠群中,95.89%在29条染色体上有唯一位置。 分析表明,该基因组包含15323个蛋白质编码基因和63.44%的重复序列。系统发育分析表明, 可能在大约1.2205亿年前从 、 、 、 和 的共同祖先中分化出来。许多基因家族在 基因组中扩增,特别是Toll和IMD信号通路的基因家族,其中 在该通路中有10个基因, 在该通路中有19个基因, 在该通路中有11个基因。本研究结果将有助于阐明 抵御外来物质和病原体的机制,并可能为控制这种害虫指明一条潜在途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8315/8589036/c67252497809/fgene-12-728418-g001.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验