哈萨克斯坦阿拉木图医院分离出的革兰氏阴性机会致病菌的全基因组序列
Complete Genome Sequences of Gram-Negative Opportunistic Pathogens Isolated in Hospitals in Almaty, Kazakhstan.
作者信息
Korotetskiy Ilya S, Jumagaziyeva Ardak B, Kerimzhanova Bahkytzhan, Reva Oleg N, Shilov Sergey V, Kuznetsova Tatyana, Zubenko Natalya, Korotetskaya Nadezhda, Bekmukhamedova Aimana, Satylgankyzy Ganiya, Klivleyeva Nailya G
机构信息
Scientific Center for Anti-Infectious Drugs, Almaty, Kazakhstan.
Centre for Bioinformatics and Computational Biology, Department of Biochemistry, Genetics, and Microbiology, University of Pretoria, Pretoria, South Africa.
出版信息
Microbiol Resour Announc. 2021 Nov 18;10(46):e0097421. doi: 10.1128/MRA.00974-21.
Abstract
The problem of nosocomial infections is growing due to the introduction of new treatment regimens involving immunosuppressive drugs. The genomes of seven Gram-negative clinical isolates of Escherichia, Klebsiella, and Pseudomonas were sequenced and analyzed in this study to serve as model microorganisms to study drug-induced antibiotic resistance reversion.
摘要
由于引入了涉及免疫抑制药物的新治疗方案，医院感染问题日益严重。本研究对七株革兰氏阴性临床分离株（大肠杆菌、克雷伯氏菌和假单胞菌）的基因组进行了测序和分析，以作为研究药物诱导的抗生素耐药性逆转的模式微生物。
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2
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3
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Microb Genom. 2020 Oct;6(10). doi: 10.1099/mgen.0.000398.
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