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使用包含33个免疫相关基因对的预后特征预测低级别胶质瘤的生存结果

Prediction of Survival Outcome in Lower-Grade Glioma Using a Prognostic Signature with 33 Immune-Related Gene Pairs.

作者信息

Chen Shaohua, Sun Yongchu, Zhu Xiaodong, Mo Zengnan

机构信息

Department of Urology, The First Affiliated Hospital of Guangxi Medical University, Nanning, People's Republic of China.

Guangxi Collaborative Innovation Center for Genomic and Personalized Medicine, Nanning, People's Republic of China.

出版信息

Int J Gen Med. 2021 Nov 13;14:8149-8160. doi: 10.2147/IJGM.S338135. eCollection 2021.

Abstract

BACKGROUND

Lower-grade glioma (LGG) is one of the prevalent malignancies threatening human health, with considerable intrinsic heterogeneities in their biological behavior. Previous studies have revealed that the immune component is a key factor influencing the formation and development of malignancies. In this study, we aim to use a novel approach to develop a prognostic signature of immune-related gene pairs (IRGPs) to determine the survival outcome of patients with LGG.

METHODS

Transcriptomic profiles and clinical data for LGG were obtained from The Cancer Genome Atlas (TCGA) and Chinese Glioma Genome Atlas (CGGA) databases, and used as training and validation data sets, respectively. IRGPs influencing the overall survival (OS) of patients with LGG in the training data set were screened by performing univariate Cox regression analysis. Next, a prognostic IRGPs signature was constructed using least absolute shrinkage and selection operator (LASSO) regression. Finally, we cross-validated the two databases to verify the stability of the prognostic signature.

RESULTS

A total of 33 IRGPs influencing prognosis of LGG in the training data set were included in the prognostic signature. Patients with high risk scores (RSs) in the training and validation data sets had a poorer OS than those with low RSs. Moreover, significant differences were observed in tumor-infiltrating immune cells (TICs) between high- and low-RS groups. Functional enrichment analyses results revealed that genes in the high-RS group were enriched in the immune-related activities and developmental processes.

CONCLUSION

The prognostic signature containing 33 IRGPs has a significant correlation with OS and relative levels of immune cells associated with LGG. The results of the present study provide new insights into the prediction of survival outcome and therapeutic response of LGG.

摘要

背景

低级别胶质瘤(LGG)是威胁人类健康的常见恶性肿瘤之一,其生物学行为存在相当大的内在异质性。先前的研究表明,免疫成分是影响恶性肿瘤形成和发展的关键因素。在本研究中,我们旨在采用一种新方法来开发免疫相关基因对(IRGP)的预后特征,以确定LGG患者的生存结果。

方法

从癌症基因组图谱(TCGA)和中国胶质瘤基因组图谱(CGGA)数据库中获取LGG的转录组概况和临床数据,分别用作训练和验证数据集。通过进行单变量Cox回归分析,筛选出影响训练数据集中LGG患者总生存期(OS)的IRGP。接下来,使用最小绝对收缩和选择算子(LASSO)回归构建预后IRGP特征。最后,我们对两个数据库进行交叉验证,以验证预后特征的稳定性。

结果

预后特征中纳入了总共33个影响训练数据集中LGG预后的IRGP。训练和验证数据集中高风险评分(RS)的患者比低RS的患者OS更差。此外,高RS组和低RS组之间在肿瘤浸润免疫细胞(TIC)方面观察到显著差异。功能富集分析结果显示,高RS组中的基因在免疫相关活动和发育过程中富集。

结论

包含33个IRGP的预后特征与LGG的OS和免疫细胞相对水平具有显著相关性。本研究结果为LGG生存结果的预测和治疗反应提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0c16/8598129/50f85e409b09/IJGM-14-8149-g0001.jpg

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