Department for Sustainable Food Process (DiSTAS), Università Cattolica del Sacro Cuore, Piacenza, Italy.
Int J Syst Evol Microbiol. 2021 Nov;71(11). doi: 10.1099/ijsem.0.005119.
A novel Gram-stain-positive, strictly aerobic, short rod-shaped bacterium, designated 2C, was isolated from freshly packaged microfiltered milk. This strain was able to grow within the NaCl concentration range of 0-5 % (w/v), temperature range of 8-37 °C (optimally at 30 °C) and at pH 6.0-10.0. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 2C was closely related to species of the genus , with the highest sequence similarity (99.2 %) to DSM 20427 as well as DSM 18909 (=YM18-098). The phylogenetic tree based on 16S rRNA genes showed that strain 2C clustered with DSM 18909. However, the phylogenetic tree based on concatenated 16S rRNA and four housekeeping genes showed that strain 2C clustered with DSM 20427. Furthermore, the phylogenomic tree showed that strain 2C clustered with DSM 20427 and DSM 18909. The major respiratory quinones were MK-10, MK-11 and MK-12. The predominant cellular fatty acids were anteiso-C, iso-C and anteiso-C. The polar lipid composition of strain 2C consisted of diphosphatidylglycerol, phosphatidylglycerol, three unidentified glycolipids and two unidentified lipids. The cell-wall peptidoglycan type was a variant of B1 {Gly} [l-Lys] d-Glu-l-Lys, with the amino acids lysine, glycine, alanine and glutamic acid. The whole-cell sugars consisted of galactose, glucose, ribose and minor amounts of rhamnose. In addition, strain 2C showed a glycolyl-type cell wall. The genomic DNA G+C content was 69.8mol%, while the average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values with the closely related species were below the recognized thresholds of 95-96 % ANI and 70 % DDH for species definition. Based on the phenotypic and genotypic data, strain 2C (=LMG 32277=CECT 30329) is considered to represent a new species, for which the name sp. nov. is proposed.
一株新型革兰氏阳性、严格需氧、短杆状细菌,命名为 2C,从新鲜包装的微滤牛奶中分离得到。该菌株能够在 NaCl 浓度范围为 0-5%(w/v)、温度范围为 8-37°C(最适温度为 30°C)和 pH 值 6.0-10.0 范围内生长。基于 16S rRNA 基因序列的系统发育分析表明,菌株 2C 与属内的种密切相关,与 DSM 20427 的序列相似度最高(99.2%),与 DSM 18909(=YM18-098)也相似。基于 16S rRNA 基因的系统发育树显示,菌株 2C 与 DSM 18909 聚类。然而,基于 16S rRNA 和四个看家基因的串联序列构建的系统发育树显示,菌株 2C 与 DSM 20427 聚类。此外,系统基因组树显示菌株 2C 与 DSM 20427 和 DSM 18909 聚类。主要的呼吸醌是 MK-10、MK-11 和 MK-12。主要的细胞脂肪酸是 anteiso-C、iso-C 和 anteiso-C。菌株 2C 的极性脂由二磷脂酰甘油、磷脂酰甘油、三种未鉴定的糖脂和两种未鉴定的脂组成。细胞壁肽聚糖类型是 B1{Gly}[l-Lys]d-Glu-l-Lys 的变体,其中含有赖氨酸、甘氨酸、丙氨酸和谷氨酸。全细胞糖由半乳糖、葡萄糖、核糖和少量鼠李糖组成。此外,菌株 2C 表现出糖基化细胞壁。基因组 DNA G+C 含量为 69.8mol%,而与密切相关的种的平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交(dDDH)值均低于种定义的 95-96%ANI 和 70%DDH 的公认阈值。基于表型和基因型数据,菌株 2C(=LMG 32277=CECT 30329)被认为代表一个新种,因此提议使用 sp. nov. 作为新种的名称。
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