Department of orthopedics, The Second Hospital of Shanxi Medical University, Shanxi Key laboratory of Bone and Soft Tissue Injury Repair, 382 Wuyi road, Taiyuan, Shanxi 030001, PR China.
State Key Laboratory of Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Changping, Beijing 102206, PR China.
Int J Syst Evol Microbiol. 2021 Feb;71(2). doi: 10.1099/ijsem.0.004662.
Four novel bacterial strains (ST-M6, L-033, L-031 and Z-333) were isolated from the intestinal contents of plateau pikas () collected on the QinghaiTibet Plateau, PR China. Cells were aerobic, non-motile, Gram-stain-positive, catalase-positive, oxidase-negative, capsuled and short-rod-shaped. Phylogenetic analyses based on the 16S rRNA gene sequences and 387 core genes indicated that the four isolates belong in the genus and clearly separate from recognized species. The two type strains (ST-M6 and L-031) shared low 16S rRNA similarity, average nucleotide identity values and digital DNA-DNA hybridization relatedness with their phylogenetic neighbours ( DSM 18659, DSM 19179, JCM 30598, CCTCC M208212, DSM 16091 and DSM 20754). The genomic DNA G+C contents of strains ST-M6 and L-031 were 70.4 and 70.7 mol%, respectively. The major cellular fatty acids of strain ST-M6 were anteiso-C, anteiso-C and iso-C, in contrast to anteiso-C, anteiso-C and anteiso-C 9 of strain L-031. Both type strains (ST-M6 and L-031) were glycolate test positive and shared the following common features: MK-11 and MK-12 as major menaquinones; rhamnose, ribose, mannose and galactose as major cell-wall sugars; diphosphatidylglycerol, phosphatidylglycerol and two glycolipids as polar lipids; and ornithine, alanine, glycine and glutamic acid as cell-wall amino acids. Comparing the phenotypic, phylogenetic and chemotaxonomic features of the four strains and their related taxa, strains ST-M6 and L-031 represent two novel species of the genus , for which the names sp. nov. (type strain ST-M6=CGMCC 1.16364=DSM 104058) and sp. nov. (type strain L-031 =CGMCC 1.16363=DSM 106170) are proposed.
从中国青藏高原采集的高原兔肠道内容物中分离出 4 株新型细菌(ST-M6、L-033、L-031 和 Z-333)。细胞为需氧、非运动、革兰氏阳性、过氧化氢酶阳性、氧化酶阴性、胶囊状和短杆状。基于 16S rRNA 基因序列和 387 个核心基因的系统发育分析表明,这 4 株菌属于 属,与公认的种明显分离。两个模式株(ST-M6 和 L-031)与它们的系统发育近缘种(DSM 18659、DSM 19179、JCM 30598、CCTCC M208212、DSM 16091 和 DSM 20754)的 16S rRNA 相似性、平均核苷酸同一性值和数字 DNA-DNA 杂交相关性较低。ST-M6 和 L-031 菌株的基因组 DNA G+C 含量分别为 70.4mol%和 70.7mol%。ST-M6 菌株的主要细胞脂肪酸为 anteiso-C、anteiso-C 和 iso-C,而 L-031 菌株的主要细胞脂肪酸为 anteiso-C、anteiso-C 和 anteiso-C9。两个模式株(ST-M6 和 L-031)均为乙醇酸盐试验阳性,具有以下共同特征:MK-11 和 MK-12 为主要的menaquinones;鼠李糖、核糖、甘露糖和半乳糖为主要的细胞壁糖;双磷脂酰甘油、磷脂酰甘油和两种糖脂为极性脂;鸟氨酸、丙氨酸、甘氨酸和谷氨酸为细胞壁氨基酸。比较 4 株菌及其相关分类群的表型、系统发育和化学分类特征,ST-M6 和 L-031 株代表 属的两个新种,分别命名为 sp. nov.(ST-M6 型菌株=CGMCC 1.16364=DSM 104058)和 sp. nov.(L-031 型菌株=CGMCC 1.16363=DSM 106170)。
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