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小麦海藻糖-6-磷酸磷酸酶基因家族的计算机模拟和转录分析:海藻糖合成基因有助于盐胁迫、干旱胁迫和叶片衰老。

In Silico and Transcription Analysis of Trehalose-6-phosphate Phosphatase Gene Family of Wheat: Trehalose Synthesis Genes Contribute to Salinity, Drought Stress and Leaf Senescence.

机构信息

State Key Laboratory of Sustainable Dryland Agriculture, College of Agronomy, Shanxi Agricultural University, Taigu 030801, China.

Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Korea.

出版信息

Genes (Basel). 2021 Oct 20;12(11):1652. doi: 10.3390/genes12111652.

Abstract

Trehalose-6-phosphate phosphatase () genes take part in trehalose metabolism and also in stress tolerance, which has been well documented in many species but poorly understood in wheat. The present research has identified a family of 31 genes in L. through homology searches and classified them into five clades by phylogenetic tree analysis, providing evidence of an evolutionary status with and The exon-intron distribution revealed a discrete evolutionary history and projected possible gene duplication occurrences. Furthermore, different computational approaches were used to analyze the physical and chemical properties, conserved domains and motifs, subcellular and chromosomal localization, and three-dimensional (3-D) protein structures. -regulatory elements (CREs) analysis predicted that promoters consist of CREs related to plant growth and development, hormones, and stress. Transcriptional analysis revealed that the transcription levels of were variable in different developmental stages and organs. In addition, qRT-PCR analysis showed that different were induced under salt and drought stresses and during leaf senescence. Therefore, the findings of the present study give fundamental genomic information and possible biological functions of the gene family in wheat and will provide the path for a better understanding of involvement in wheat developmental processes, stress tolerance, and leaf senescence.

摘要

海藻糖-6-磷酸磷酸酶(TPP)基因参与海藻糖代谢和应激耐受,这在许多物种中已有充分的研究,但在小麦中了解甚少。本研究通过同源性搜索在 L. 中鉴定了 31 个基因家族,并通过系统发育树分析将其分为五个分支,为 和 的进化地位提供了证据。外显子-内含子分布揭示了离散的进化历史,并预测了可能的基因复制事件。此外,还使用不同的计算方法分析了物理和化学性质、保守结构域和基序、亚细胞和染色体定位以及三维(3-D)蛋白质结构。顺式作用元件(CREs)分析预测, 启动子包含与植物生长发育、激素和胁迫相关的 CREs。转录分析显示,不同发育阶段和器官中 的转录水平存在差异。此外,qRT-PCR 分析表明,不同的 在盐胁迫和干旱胁迫以及叶片衰老过程中被诱导。因此,本研究的结果为小麦 基因家族提供了基本的基因组信息和可能的生物学功能,并为更好地理解 在小麦发育过程、应激耐受和叶片衰老中的作用提供了途径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3108/8618227/3aea10ebbbe2/genes-12-01652-g001.jpg

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