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通过靶向 NGS panel 鉴定高血铁蛋白血症患者的新型突变。

Identification of Novel Mutations by Targeted NGS Panel in Patients with Hyperferritinemia.

机构信息

Department of Medicine and Surgery, University of Milano-Bicocca, 20900 Monza, Italy.

Medical Genetics, S. Gerardo Hospital, ASST-Monza, 20900 Monza, Italy.

出版信息

Genes (Basel). 2021 Nov 9;12(11):1778. doi: 10.3390/genes12111778.

Abstract

BACKGROUND

Several inherited diseases cause hyperferritinemia with or without iron overload. Differential diagnosis is complex and requires an extensive work-up. Currently, a clinical-guided approach to genetic tests is performed based on gene-by-gene sequencing. Although reasonable, this approach is expensive and time-consuming and Next Generation Sequencing (NGS) technology may provide cheaper and quicker large-scale DNA sequencing.

METHODS

We analysed 36 patients with non--related hyperferritinemia. Liver iron concentration was measured in 33 by magnetic resonance. A panel of 25 iron related genes was designed using SureDesign software. Custom libraries were generated and then sequenced using Ion Torrent PGM.

RESULTS

We identified six novel mutations in , three novel and one known mutation in , one known mutation and a de-novo deletion in , and a novel mutation in in ten patients. In silico analyses supported the pathogenic role of the mutations.

CONCLUSIONS

Our results support the use of an NGS-based panel in selected patients with hyperferritinemia in a tertiary center for iron metabolism disorders. However, 26 out of 36 patients did not show genetic variants that can individually explain hyperferritinemia and/or iron overload suggesting the existence of other genetic defects or gene-gene and gene-environment interactions needing further studies.

摘要

背景

一些遗传性疾病可导致铁蛋白血症伴或不伴有铁过载。鉴别诊断较为复杂,需要进行广泛的检查。目前,根据基因测序的方法,基于临床的基因检测策略已被用于遗传性疾病的诊断。尽管这种方法合理,但费用高且耗时,下一代测序(NGS)技术可能提供更经济、快速的大规模 DNA 测序。

方法

我们分析了 36 名非亲缘性铁蛋白血症患者。其中 33 名患者采用磁共振测量肝铁浓度。使用 SureDesign 软件设计了一组 25 个与铁相关的基因。定制文库生成后,使用 Ion Torrent PGM 进行测序。

结果

我们在 10 名患者中发现了 6 个 的新突变,3 个新的和 1 个已知的 的突变,1 个已知的和 1 个新的 的缺失,以及 1 个新的 的突变。计算机分析支持突变的致病性。

结论

我们的结果支持在铁代谢紊乱的三级中心,对铁蛋白血症患者使用基于 NGS 的基因检测面板。然而,36 名患者中的 26 名并未显示可单独解释铁蛋白血症和/或铁过载的遗传变异,提示可能存在其他遗传缺陷或基因-基因和基因-环境相互作用,需要进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6537/8623017/eb1f46f39ca9/genes-12-01778-g001.jpg

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