Psareva Ekaterina K, Liskova Elena A, Razheva Irina V, Yushina Yulia K, Grudistova Maria A, Gladkova Nadezda A, Potemkin Eugene A, Zhurilov Pavel A, Sokolova Elena V, Andriyanov Pavel A, Voronina Olga L, Kolbasov Denis V, Ermolaeva Svetlana A
Federal Research Center for Virology and Microbiology, Branch in Nizhny Novgorod, 603950 Nizhny Novgorod, Russia.
V.M. Gorbatov Research Center for Food Systems of Russian Academy of Sciences, 109316 Moscow, Russia.
Foods. 2021 Nov 12;10(11):2790. doi: 10.3390/foods10112790.
Totally, 45 strains isolated from meat, poultry, dairy, and fish products in the Central European part of Russia in 2001-2005 and 2019-2020 were typed using a combined MLST and internalin profile (IP) scheme. Strains belonged to 14 clonal complexes (CCs) of the phylogenetic lineages I and II. Almost half of the strains (20 of 45) belonged to six CCs previously recognized as epidemic clones (ECs). ECI and ECV strains were isolated during both studied periods, and ECII, ECIV, ECVI, and ECVII strains were isolated in 2001-2005, but not in 2019-2020. ECI, ECIV, ECV, and ECVII strains were isolated from products of animal origin. ECII and ECVI were isolated from fish. Testing of invasion efficiencies of 10 strains isolated in different years and from different sources and belonging to distinct CCs revealed a statistically significant difference between phylogenetic lineage I and II strains but not between ECs and non-EC CCs or strains differing by year and source of isolation. Strains isolated in 2001-2005 were characterized by higher phylogenetic diversity and greater presentation of ECs and CCs non-typical for natural and anthropogenic environments of the European part of Russia comparatively to isolates obtained in 2019-2020.Closing of the Russian market in 2019-2020 for imported food might be responsible for these differences.
2001年至2005年以及2019年至2020年期间,从俄罗斯中欧地区的肉类、家禽、乳制品和鱼类产品中分离出的45株菌株,采用多位点序列分型(MLST)和内化素谱(IP)组合方案进行分型。这些菌株属于系统发育谱系I和II的14个克隆复合体(CCs)。几乎一半的菌株(45株中的20株)属于先前被认定为流行克隆(ECs)的6个CCs。在两个研究期间均分离出了ECI和ECV菌株,而ECII、ECIV、ECVI和ECVII菌株是在2001年至2005年分离出的,但在2019年至2020年未分离出。ECI、ECIV、ECV和ECVII菌株是从动物源性产品中分离出的。ECII和ECVI是从鱼类中分离出的。对不同年份、不同来源且属于不同CCs的10株菌株的侵袭效率进行测试,结果显示系统发育谱系I和II的菌株之间存在统计学上的显著差异,但ECs和非EC CCs之间或因分离年份和来源不同的菌株之间不存在显著差异。与2019年至2020年获得的分离株相比,2001年至2005年分离出的菌株具有更高的系统发育多样性,并且在俄罗斯欧洲部分的自然和人为环境中,ECs和非典型CCs的出现频率更高。2019年至2020年俄罗斯市场对进口食品的关闭可能是造成这些差异的原因。