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利用 RNA-Seq 深入了解 C3 和 C4 光合作用的调控。

Insights into Regulation of C and C Photosynthesis in / Using RNA-Seq.

机构信息

Systematics, Biodiversity and Evolution of Plants, Ludwig Maximilian University Munich, 80638 Munich, Germany.

Martinstraße 20, 55116 Mainz, Germany.

出版信息

Int J Mol Sci. 2021 Nov 9;22(22):12120. doi: 10.3390/ijms222212120.

Abstract

(incl. ) shows an immense diversity of C syndromes. More than 15 independent origins of C photosynthesis, and the largest number of C species in eudicots signify the importance of this angiosperm lineage in C evolution. Here, we conduct RNA-Seq followed by comparative transcriptome analysis of three species from representing related clades with different photosynthetic types: (C), (C), and (C). Results show that belongs to the NADP-ME type and core genes encoding for C cycle are significantly upregulated when compared with and . and share a number of upregulated C-related genes; however, two C transporters (DIT and TPT) are found significantly upregulated only in . Combined analysis of transcription factors (TFs) of the closely related lineages ( and ) revealed that no C-specific TFs are higher in C species compared with C species; instead, the C species show their own set of upregulated TFs. Taken together, our study indicates that the hypothesis of the C photosynthesis as a proxy towards C photosynthesis is questionable in and more in favour of an independent evolutionary stable state.

摘要

(包括)显示出 C 综合征的巨大多样性。超过 15 种独立的 C 光合作用起源,以及在真双子叶植物中 C 物种的最大数量,都表明了这个被子植物谱系在 C 进化中的重要性。在这里,我们对来自代表不同光合作用类型相关类群的三个物种进行了 RNA-Seq 测序,并进行了比较转录组分析:(C)、(CAM)和(C3)。结果表明,属于 NADP-ME 型,与 C 循环相关的核心基因的表达水平明显高于 和 。 和 共享许多上调的 C 相关基因;然而,只有在 中发现了两个 C 转运蛋白(DIT 和 TPT)显著上调。对密切相关谱系(和)的转录因子(TFs)的综合分析表明,与 C 物种相比,C 物种中没有特定的 C TFs 更高;相反,C 物种表现出自己一套上调的 TFs。总的来说,我们的研究表明,C 光合作用作为 C 光合作用的代表的假说在 和 中是值得怀疑的,而更倾向于独立的进化稳定状态。

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