Dekio Itaru, Okuda Ken-Ichi, Nishida Masako, Hamada-Tsutsumi Susumu, Suzuki Tomo, Kinoshita Shigeru, Tamura Hiroto, Ohnuma Kenichiro, Murakami Yoshiyuki, Kinjo Yuki, Asahina Akihiko
Department of Dermatology, The Jikei University School of Medicine, 3-25-8 Nishi-shinbashi, Minato-ku, Tokyo 105-8461, Japan.
Seikakai Mildix Skin Clinic, 3rd Floor, 3-98 Senju, Adachi-ku, Tokyo 120-0034, Japan.
Microorganisms. 2021 Nov 12;9(11):2343. doi: 10.3390/microorganisms9112343.
is a new species coined in 2020 as the fifth species of genus , which includes . The species is predicted as a minor but common member of skin microbiome and includes a group tentatively named as "". The description of the species has been provided only with a single strain. To establish the characteristics of and search for possible disease-related subtypes, we investigated the biochemical characteristics of eight live strains and performed in silico comparison of nine genomes. The common features, which included the morphology of Gram-stain positive short rods, the negativity of phenylalanine arylamidase, and several unique MALDI-TOF MS spectral peaks, were considered useful in laboratory identification. Pairwise comparisons of the genomes by in silico DNA-DNA hybridization showed similarity values of 98.1% or larger, which were far higher than the subspecies cutoff of 79-80%. The gene sequences of thirteen isolates and genomes were identical. Their gene sequences were identical except for two strains, HM-510 (HL037PA2) and Marseille-P5998, which showed unique one-nucleotide polymorphisms. The biochemical features using API kits were slightly different among the isolates but far closer than those of the nearest other species, and . Spectra of MALDI-TOF mass spectrometry showed slight differences in the presence of / 10,512 (10 kD chaperonin GroS) and three other peaks, further clustering the eight isolates into three subtypes. These results indicated that these isolates did not separate to form subspecies-level clusters, but subtyping is possible by using gene sequences or MALDI-TOF mass spectrometry spectra. Moreover, this work has confirmed that a group "" is included in .
是2020年新命名的一个物种,为属的第五个物种,该属包括 。该物种被预测为皮肤微生物群中的一个次要但常见的成员,包括一个暂命名为“”的类群。该物种的描述仅基于一个菌株。为了确定 的特征并寻找可能与疾病相关的亚型,我们研究了8个活菌株的生化特性,并对9个基因组进行了计算机模拟比较。包括革兰氏染色阳性短杆菌形态、苯丙氨酸芳基酰胺酶阴性以及几个独特的基质辅助激光解吸电离飞行时间质谱(MALDI-TOF MS)光谱峰在内的共同特征,被认为对实验室鉴定有用。通过计算机模拟DNA-DNA杂交对基因组进行成对比较,显示相似性值为98.1%或更高,远高于亚种临界值79 - 80%。13个分离株和基因组的 基因序列相同。除了两个菌株HM-510(HL037PA2)和马赛-P5998显示出独特的单核苷酸多态性外,它们的 基因序列相同。使用API试剂盒检测的生化特征在分离株之间略有不同,但远比最接近的其他物种 和 的特征更相似。MALDI-TOF质谱光谱显示在 / 10,512(10 kD伴侣蛋白GroS)和其他三个峰的存在上有细微差异,进一步将8个分离株聚为三个亚型。这些结果表明,这些分离株没有形成亚种水平的聚类,但通过使用 基因序列或MALDI-TOF质谱光谱可以进行亚型划分。此外,这项工作证实了 中包含一个“”类群。