Department of Electrical Engineering, Pennsylvania State University, University Park, PA, USA.
Department of Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.
Methods Mol Biol. 2022;2393:297-313. doi: 10.1007/978-1-0716-1803-5_16.
One of the grand challenges for field-deployable NATs is related to the front end of the assays-nucleic acid extraction from raw samples. The ideal nucleic acid sample preparation should be simple, scalable, and easy-to-operate. In this chapter, we present a lab-on-a-disc NAT device for sample-to-answer malaria diagnosis. The parasite DNA sample preparation and subsequent real-time LAMP detection are seamlessly integrated on a disposable single microfluidic compact disc, driven by energy-efficient, non-centrifuge-based magnetic field interactions. Each disc contains four parallel testing units, which could be configured either as four identical tests or as four species-specific tests. When configured as species-specific tests, it could identify two of the most life-threatening malaria species (P. falciparum and P. vivax). The reagent disc with a 4-plex analyzer (discussed in Chapter 1 ) is capable of processing four samples simultaneously with 40 min turnaround time. It achieves a detection limit of ~0.5 parasites/μl for whole blood, sufficient for detecting asymptomatic parasite carriers. The assay is performed with an automated device described in Chapter 14 . The combination of sensitivity, specificity, cost, and scalable sample preparation suggests the real-time fluorescence LAMP device could be particularly useful for malaria screening in field settings.
现场可部署 NAT 的一个重大挑战与检测的前端有关,即从原始样本中提取核酸。理想的核酸样品制备应该简单、可扩展且易于操作。在本章中,我们展示了一种用于即时疟疾诊断的碟式纳升分析装置。寄生虫 DNA 样品制备和随后的实时环介导等温扩增检测在一次性单个微流控光盘上无缝集成,由节能、非离心磁场相互作用驱动。每个光盘包含四个平行的测试单元,可以配置为四个相同的测试,也可以配置为四个特定物种的测试。当配置为特定物种的测试时,它可以识别两种最具致命性的疟疾物种(恶性疟原虫和间日疟原虫)。在第 1 章中讨论的 4 重分析器试剂盘能够同时处理四个样本,周转时间为 40 分钟。它对全血的检测限达到约 0.5 个寄生虫/μl,足以检测无症状寄生虫携带者。该检测采用第 14 章中描述的自动化设备进行。该实时荧光环介导等温扩增检测具有灵敏度、特异性、成本和可扩展的样品制备等优势,表明该装置特别适用于现场的疟疾筛查。