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在不同工作频率下对复杂生物流体分析物混合物的 1 H NMR 图谱进行计算模拟:在低场台式光谱中的应用。

Computational simulation of H NMR profiles of complex biofluid analyte mixtures at differential operating frequencies: Applications to low-field benchtop spectra.

机构信息

Department of Chemistry, University of Loughborough, Loughborough, UK.

School of Computer Science and Informatics, De Montfort University, Leicester, UK.

出版信息

Magn Reson Chem. 2022 Dec;60(12):1097-1112. doi: 10.1002/mrc.5236. Epub 2022 Jan 17.

Abstract

Estimations of accurate and reliable NMR chemical shift values, coupling patterns and constants within a reasonable timeframe remain significantly challenging, and the unavailability of reliable software strategies for the prediction of low-field (e.g., 60 MHz) spectra from those acquired at higher operating frequencies hampers their direct comparison. Hence, this study explored the applications of accessible software options for predicting these parameters in the H NMR profiles of analytes as a function of magnetic field strength; this was performed for individual analytes and also for complex biofluid matrices featured in metabolomics investigations. For this purpose, results from the very first successful experimental acquisition and simulation of the H NMR profiles of intact human salivary supernatant samples on a 60 MHz benchtop spectrometer were evaluated. Using salivary metabolite concentrations determined at 400 MHz, it was demonstrated that simulation of the low-field spectra of five biomolecules with the most prominent H resonances detectable allowed multiple component fits to be applied to experimental spectra. Hence, these salivary H NMR profiles could be successfully predicted throughout the 45-600 MHz operating frequency range. With the exception of propionate resonance multiplets, which revealed more complex coupling patterns at low field and required more astute computational and fitting options, valuable quantitative metabolomics data on salivary acetate, formate, methanol and glycine could be attained from low-field spectrometres. These studies are both timely and pertinent in view of the recent advancement of low-field benchtop NMR facilities for diagnostically significant biomarker tracking in biofluids. Experiments performed with added ammonium chloride to facilitate the release of salivary metabolites from biopolymer binding sites provided evidence that a small but nevertheless significant proportion of propionate, but not lactate, was bound to such sites, an observation of much relevance to biomolecule quantification in salivary metabolomics investigations.

摘要

在合理的时间内,准确可靠地估算 NMR 化学位移值、耦合模式和常数仍然是一项极具挑战性的工作,而且缺乏可靠的软件策略来预测较低磁场(例如 60MHz)谱图,这阻碍了它们之间的直接比较。因此,本研究探索了可用于预测这些参数的软件选项在分析物的 H NMR 图谱中的应用,作为磁场强度的函数;这是针对单个分析物以及代谢组学研究中复杂生物流体基质进行的。为此,评估了在 60MHz 台式光谱仪上首次成功实验采集和模拟完整人唾液上清液样品的 H NMR 图谱的结果。使用在 400MHz 下测定的唾液代谢物浓度,表明模拟五个具有最显著 H 共振可检测的生物分子的低场光谱,可以对实验光谱进行多组分拟合。因此,可以成功地预测这些唾液 H NMR 图谱在 45-600MHz 的工作频率范围内的情况。除了丙酸共振多重峰外,这些共振多重峰在低场时显示出更复杂的耦合模式,需要更敏锐的计算和拟合选项,否则可以从低场光谱仪获得有价值的唾液乙酸盐、甲酸盐、甲醇和甘氨酸的定量代谢组学数据。鉴于最近在生物流体中进行诊断相关生物标志物跟踪的低场台式 NMR 设施的发展,这些研究既及时又恰当。向样品中添加氯化铵以促进唾液代谢物从生物聚合物结合位点释放的实验提供了证据表明,尽管比例较小,但丙酸而不是乳酸与这些位点结合,这一观察结果对唾液代谢组学研究中的生物分子定量具有重要意义。

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