Agudo-Canalejo Jaime, Adeleke-Larodo Tunrayo, Illien Pierre, Golestanian Ramin
Department of Living Matter Physics, Max Planck Institute for Dynamics and Self-Organization, D-37077 Göttingen, Germany.
Rudolf Peierls Centre for Theoretical Physics, University of Oxford, Oxford OX1 3PU, United Kingdom.
Phys Rev Lett. 2021 Nov 12;127(20):208103. doi: 10.1103/PhysRevLett.127.208103.
We examine the stochastic dynamics of two enzymes that are mechanically coupled to each other, e.g., through an elastic substrate or a fluid medium. The enzymes undergo conformational changes during their catalytic cycle, which itself is driven by stochastic steps along a biased chemical free energy landscape. We find conditions under which the enzymes can synchronize their catalytic steps, and discover that the coupling can lead to a significant enhancement in their overall catalytic rate. Both effects can be understood as arising from a global bifurcation in the underlying dynamical system at sufficiently strong coupling. Our findings suggest that, despite their molecular scale, enzymes can be cooperative and improve their performance in metabolic clusters.
我们研究了两种通过弹性底物或流体介质等方式相互机械耦合的酶的随机动力学。这些酶在催化循环过程中会发生构象变化,而催化循环本身是由沿着有偏化学自由能景观的随机步骤驱动的。我们发现了酶能够使其催化步骤同步的条件,并发现这种耦合可以导致它们整体催化速率的显著提高。这两种效应都可以理解为在足够强的耦合下基础动力学系统中全局分岔的结果。我们的研究结果表明,尽管酶处于分子尺度,但它们在代谢簇中可以相互协作并提高其性能。