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酶催化中的偶联运动。

Coupled motions in enzyme catalysis.

机构信息

Department of Chemistry, The Pennsylvania State University, 414 Wartik Laboratory, University Park, PA 16802, USA.

出版信息

Curr Opin Chem Biol. 2010 Oct;14(5):644-51. doi: 10.1016/j.cbpa.2010.07.020. Epub 2010 Aug 20.

DOI:10.1016/j.cbpa.2010.07.020
PMID:20729130
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2953590/
Abstract

Recently, the hypothesis that protein motions are involved in enzymatic turnover has gained significant attention. We review cases where there is evidence that protein motions are rate-limiting in the overall catalytic cycle and examine experimental and theoretical evidence for how such motions enhance the probability of sampling the transition state configurations relative to the ground state. The impact of tunneling, the possible role of vibrational coupling and the value of conformational chemical landscapes are also scrutinized.

摘要

最近,蛋白质运动参与酶周转的假说引起了广泛关注。我们回顾了一些有证据表明蛋白质运动在整个催化循环中起限速作用的案例,并研究了实验和理论证据,以了解这些运动如何提高相对于基态采样过渡态构象的概率。我们还仔细研究了隧穿的影响、振动耦合的可能作用以及构象化学景观的价值。

相似文献

1
Coupled motions in enzyme catalysis.酶催化中的偶联运动。
Curr Opin Chem Biol. 2010 Oct;14(5):644-51. doi: 10.1016/j.cbpa.2010.07.020. Epub 2010 Aug 20.
2
Catalytic efficiency of enzymes: a theoretical analysis.酶的催化效率:理论分析。
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3
Role of dynamics in enzyme catalysis: substantial versus semantic controversies.动力学在酶催化中的作用:实质争议与语义争议
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4
Perspectives on electrostatics and conformational motions in enzyme catalysis.酶催化中静电作用与构象运动的观点
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5
Low-Frequency Protein Motions Coupled to Catalytic Sites.低频蛋白运动与催化位点偶联。
Annu Rev Phys Chem. 2020 Apr 20;71:267-288. doi: 10.1146/annurev-physchem-050317-014308.
6
Transition States and transition state analogue interactions with enzymes.过渡态及过渡态类似物与酶的相互作用。
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Using NMR spectroscopy to elucidate the role of molecular motions in enzyme function.利用核磁共振光谱阐明分子运动在酶功能中的作用。
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Protein dynamics and enzyme catalysis: insights from simulations.蛋白质动力学与酶催化:模拟研究的见解
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Dynamically achieved active site precision in enzyme catalysis.酶催化中动态实现的活性位点精准度。
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A perspective on enzyme catalysis.酶催化的观点。
Science. 2003 Aug 29;301(5637):1196-202. doi: 10.1126/science.1085515.

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Conformational flexibility of His200 enables catalytic activity in the T200H mutant of carbonic anhydrase II.组氨酸200的构象灵活性使碳酸酐酶II的T200H突变体具有催化活性。
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Fast product release requires active-site water dynamics in carbonic anhydrase.快速的产物释放需要碳酸酐酶活性位点的水动力学。
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Temporal Resolution of Activity-Related Solvation Dynamics in the TIM Barrel Enzyme Murine Adenosine Deaminase.TIM桶状酶小鼠腺苷脱氨酶中与活性相关的溶剂化动力学的时间分辨率
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Selection of a promiscuous minimalist cAMP phosphodiesterase from a library of de novo designed proteins.从从头设计的蛋白质文库中选择一种杂乱无章的最小 cAMP 磷酸二酯酶。
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Ratcheting synthesis.棘轮合成
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From random to rational: improving enzyme design through electric fields, second coordination sphere interactions, and conformational dynamics.从随机到理性:通过电场、二级配位层相互作用和构象动力学改进酶设计。
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本文引用的文献

1
Impact of distal mutation on hydrogen transfer interface and substrate conformation in soybean lipoxygenase.大豆脂氧合酶中远端突变对氢转移界面和底物构象的影响。
J Phys Chem B. 2010 May 20;114(19):6653-60. doi: 10.1021/jp100133p.
2
At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis?21 世纪的黎明:动力学是理解酶催化的缺失环节吗?
Proteins. 2010 May 1;78(6):1339-75. doi: 10.1002/prot.22654.
3
Millisecond timescale fluctuations in dihydrofolate reductase are exquisitely sensitive to the bound ligands.二氢叶酸还原酶的毫秒时间尺度波动对结合配体极其敏感。
Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1373-8. doi: 10.1073/pnas.0914163107. Epub 2010 Jan 8.
4
Nuclear magnetic resonance study of the role of M42 in the solution dynamics of Escherichia coli dihydrofolate reductase.核磁共振研究 M42 在大肠杆菌二氢叶酸还原酶溶液动力学中的作用。
Biochemistry. 2010 Mar 2;49(8):1606-15. doi: 10.1021/bi901798g.
5
Solvent effects on catalysis by Escherichia coli dihydrofolate reductase.溶剂对大肠杆菌二氢叶酸还原酶催化作用的影响。
J Am Chem Soc. 2010 Jan 27;132(3):1137-43. doi: 10.1021/ja909353c.
6
Hidden alternative structures of proline isomerase essential for catalysis.脯氨酸异构酶的隐藏替代结构对催化作用至关重要。
Nature. 2009 Dec 3;462(7273):669-73. doi: 10.1038/nature08615.
7
Differential quantum tunneling contributions in nitroalkane oxidase catalyzed and the uncatalyzed proton transfer reaction.硝酮氧化酶催化和非催化质子转移反应中的量子隧穿差异贡献。
Proc Natl Acad Sci U S A. 2009 Dec 8;106(49):20734-9. doi: 10.1073/pnas.0911416106. Epub 2009 Nov 19.
8
Enzymatic transition states and dynamic motion in barrier crossing.酶促过渡态与越过势垒过程中的动态运动。
Nat Chem Biol. 2009 Aug;5(8):551-8. doi: 10.1038/nchembio.202.
9
A 21st century revisionist's view at a turning point in enzymology.一位21世纪修正主义者对酶学转折点的看法。
Nat Chem Biol. 2009 Aug;5(8):543-50. doi: 10.1038/nchembio.204.
10
The far reaches of enzymology.酶学的广阔领域
Nat Chem Biol. 2009 Aug;5(8):516-20. doi: 10.1038/nchembio0809-516.