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鉴定 MRPL13 的上调作为一种新的与乳腺癌总生存时间和免疫治疗反应相关的预后标志物。

Identification of the Upregulation of MRPL13 as a Novel Prognostic Marker Associated with Overall Survival Time and Immunotherapy Response in Breast Cancer.

机构信息

Department of Thyroid and Breast Surgery, The 3rd Affiliated Hospital of Shenzhen University, Shenzhen, Guangdong Province, China.

Department of Vascular Surgery, The 3rd Affiliated Hospital of Shenzhen University, Shenzhen, Guangdong Province, China.

出版信息

Comput Math Methods Med. 2021 Nov 25;2021:1498924. doi: 10.1155/2021/1498924. eCollection 2021.

Abstract

Mitochondrial ribosomal protein (MRPL) genes have been reported to participate in many cellular processes, such as cell proliferation, apoptosis, and cell cycle. Meanwhile, the occurrence rate of breast cancer (BRCA) in China steadily increased. Exploring the prognostic value of MRPL genes in BRCA could provide novel biomarkers for BRCA. In this study, to identify prognosis-related genes in breast cancer, the value and the hazard ratio (HR) of all genes are analyzed with TCGA database. We revealed higher expression level of CEL, PGK1, WNT3A, USP41, LINC02037, PCMT1, LRP11, MCTS1, TCP1, TMEM31, STK4-AS1, STXBP5, LOC100287036, SLC16A2, MRPL13, DERL1, and TARS was correlated to shorter OS time in BRCA. However, higher expression level of JCHAIN, KLRB1, and TNFRSF14 was correlated to longer OS time in BRCA. The further analysis demonstrated MRPL13 was overexpressed in BRCA. Subtype analysis showed that MRPL13 was overexpressed in luminal, HER2-positive BRCA, and TNBC samples and was highest in TNBC samples. Moreover, we revealed higher expression of MRPL13 was significantly correlated to shorter OS time and higher TMB levels in BRCA. Pan-cancer analysis further revealed the prognostic value of MRPL13 in human cancers. MRPL13 expression was significantly increased in multiple human cancers, such as bladder cancer, colon cancer, liver cancer, and prostate cancer. Pan-cancer TMB and overall survival time showed dysregulation of MRPL13 is significantly related to the OS and TMB levels in various cancers. These results further proved that MRPL13 may be a pan-cancer biomarker for predicting prognosis and the response to immunotherapy.

摘要

线粒体核糖体蛋白 (MRPL) 基因已被报道参与许多细胞过程,如细胞增殖、凋亡和细胞周期。同时,中国乳腺癌 (BRCA) 的发病率稳步上升。探讨 MRPL 基因在 BRCA 中的预后价值可为 BRCA 提供新的生物标志物。在这项研究中,为了鉴定乳腺癌中的预后相关基因,我们利用 TCGA 数据库分析了所有基因的 值和风险比 (HR)。我们发现 CEL、PGK1、WNT3A、USP41、LINC02037、PCMT1、LRP11、MCTS1、TCP1、TMEM31、STK4-AS1、STXBP5、LOC100287036、SLC16A2、MRPL13、DERL1 和 TARS 的高表达水平与 BRCA 患者的 OS 时间缩短相关。然而,JCHAIN、KLRB1 和 TNFRSF14 的高表达水平与 BRCA 患者的 OS 时间延长相关。进一步分析表明,MRPL13 在 BRCA 中过表达。亚组分析表明,MRPL13 在管腔、HER2 阳性 BRCA 和三阴性乳腺癌样本中过表达,在三阴性乳腺癌样本中表达最高。此外,我们发现 MRPL13 的高表达与 BRCA 患者的 OS 时间缩短和 TMB 水平升高显著相关。泛癌分析进一步揭示了 MRPL13 在人类癌症中的预后价值。MRPL13 的表达在多种人类癌症中显著增加,如膀胱癌、结肠癌、肝癌和前列腺癌。泛癌 TMB 和总生存时间显示,MRPL13 的失调与各种癌症的 OS 和 TMB 水平显著相关。这些结果进一步证明,MRPL13 可能是一种预测预后和免疫治疗反应的泛癌生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e2e/8639240/0b34209477ec/CMMM2021-1498924.001.jpg

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