Duan Yuanqin, Chen Zhiwei, Li Hu, Shen Wei, Zeng Yi, Peng Mingli, Hu Peng
Key Laboratory of Molecular Biology for Infectious Diseases (Ministry of Education), Department of Infectious Diseases, Institute for Viral Hepatitis, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Front Mol Biosci. 2021 Nov 16;8:763150. doi: 10.3389/fmolb.2021.763150. eCollection 2021.
Accumulating evidence suggests that tenofovir disoproxil fumarate (TDF) can attenuate liver fibrosis directly, the mechanism of which, however, has not been fully elucidated, and there is a paucity of data concerning whether TDF can also mitigate other chronic liver diseases (CLDs). We aimed to identify the molecular targets and potential mechanism of TDF itself in ameliorating CLDs. RNA-sequencing was performed on mouse liver tissues treated with TDF or normal saline. Then the differentially expressed genes (DEGs) were screened, and enrichment analyses of the function and signaling pathways of DEGs were performed with Database for Annotation, Visualization, and Integrated Discovery (DAVID) and Metascape. Next, protein-protein interaction (PPI) networks were constructed and module analyses were utilized to identify significant genes. Subsequently, the DisGeNET platform was used to identify the potential target genes of TDF in mitigating these diseases. Finally, prediction of the transcription factors (TFs) and microRNAs (miRNAs) of the target genes was done to conjecture the underlying mechanism by which TDF relieved CLDs. As a result, a total of 854 DEGs were identified, and the DEGs were involved mainly in "immunity," "inflammation," and "metabolism" processes. In addition, 50 significant genes were obtained PPI construction and module analyses. Furthermore, by means of DisGeNET, 19 genes ( and ) were identified to be associated with nine CLDs. Finally, 34 miRNAs (especially mmu-miR-155-5p) and 12 TFs (especially Nfkb1) were predicted to be upstream of the nine target genes ( and ) of TDF in ameliorating CLDs. In conclusion, our study suggests that TDF have the potential to ameliorate CLDs independently of its antiviral activity by affecting the expression of genes involved in hepatic immune, inflammatory, and metabolic processes mmu-miR-155-5p-NF-κB signaling. These findings provided evidence for using TDF in CHB patients with concurrent CLDs.
越来越多的证据表明,富马酸替诺福韦二吡呋酯(TDF)可直接减轻肝纤维化,但其机制尚未完全阐明,而且关于TDF是否也能缓解其他慢性肝病(CLD)的数据也很匮乏。我们旨在确定TDF本身改善CLD的分子靶点和潜在机制。对用TDF或生理盐水处理的小鼠肝脏组织进行RNA测序。然后筛选差异表达基因(DEG),并使用注释、可视化和综合发现数据库(DAVID)和Metascape对DEG的功能和信号通路进行富集分析。接下来,构建蛋白质-蛋白质相互作用(PPI)网络并利用模块分析来识别重要基因。随后,使用DisGeNET平台识别TDF在缓解这些疾病中的潜在靶基因。最后,对靶基因的转录因子(TF)和微小RNA(miRNA)进行预测,以推测TDF缓解CLD的潜在机制。结果,共鉴定出854个DEG,这些DEG主要参与“免疫”、“炎症”和“代谢”过程。此外,通过PPI构建和模块分析获得了50个重要基因。此外,借助DisGeNET,鉴定出19个基因(和)与9种CLD相关。最后,预测34个miRNA(尤其是mmu-miR-155-5p)和12个TF(尤其是Nfkb1)在TDF改善CLD的9个靶基因(和)上游。总之,我们的研究表明,TDF有可能通过影响参与肝脏免疫、炎症和代谢过程的基因表达以及mmu-miR-155-5p-NF-κB信号通路,独立于其抗病毒活性来改善CLD。这些发现为在合并CLD的慢性乙型肝炎患者中使用TDF提供了证据。