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多年生植物鸭跖草(鸭跖草目:鸭跖草科)完整叶绿体基因组的特征分析 (拉夫)。

Characterization of the complete chloroplast genome of the perennial plant Raf. (Commelinales: Commelinaceae).

作者信息

Liu Yang, Liu Guang-Chen, Xu Ye

机构信息

School of Basic Medical Sciences, Jilin Medical University, Jilin, People's Republic of China.

出版信息

Mitochondrial DNA B Resour. 2021 Nov 29;6(12):3506-3507. doi: 10.1080/23802359.2021.2005477. eCollection 2021.

DOI:10.1080/23802359.2021.2005477
PMID:34869893
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8635560/
Abstract

Raf. (Ohio spiderwort/blue-jacket) is a perennial herb native to North America that has become widely established in China. The chloroplast (cp) genome of was assembled using Illumina sequencing reads. It is 164,140 bp in length with an A + T-biased nucleotide composition, and comprises a large single-copy (LSC) region (91,248 bp), a small single-copy (SSC) region (18,426 bp), and a pair of inverted repeat (IR) regions (27,233 bp). The cp genome harbors a total of 112 gene species with 19 of them being completely or partially duplicated and 18 of them possessing one or two introns. Phylogenetic analysis suggests that is most closely related to the congeneric .

摘要

紫露草(俄亥俄紫露草/蓝夹克)是一种原产于北美的多年生草本植物,已在中国广泛分布。利用Illumina测序读数组装了紫露草的叶绿体(cp)基因组。其长度为164,140 bp,核苷酸组成偏向A+T,包括一个大单拷贝(LSC)区域(91,248 bp)、一个小单拷贝(SSC)区域(18,426 bp)和一对反向重复(IR)区域(27,233 bp)。cp基因组共包含112个基因种类,其中19个完全或部分重复,18个含有一个或两个内含子。系统发育分析表明,紫露草与同属的[具体物种名称未给出]关系最为密切。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f64/8635560/df25d5755fa7/TMDN_A_2005477_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f64/8635560/df25d5755fa7/TMDN_A_2005477_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9f64/8635560/df25d5755fa7/TMDN_A_2005477_F0001_B.jpg

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本文引用的文献

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New Phytol. 2016 Jan;209(2):855-70. doi: 10.1111/nph.13617. Epub 2015 Sep 9.
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